Results 1 to 10 of about 233,815 (328)

Graphics Processing Units and High-Dimensional Optimization. [PDF]

Stat Sci, 2010
This paper discusses the potential of graphics processing units (GPUs) in high-dimensional optimization problems. A single GPU card with hundreds of arithmetic cores can be inserted in a personal computer and dramatically accelerates many statistical ...
Zhou H, Lange K, Suchard MA.
europepmc   +6 more sources

Removing duplicate reads using graphics processing units. [PDF]

BMC Bioinformatics, 2016
Background: During library construction polymerase chain reaction is used to enrich the DNA before sequencing. Typically, this process generates duplicate read sequences.
Manconi A, Moscatelli M, Armano G, Gnocchi M, Orro A, Milanesi L.   +5 more
europepmc   +8 more sources

Computational Physics on Graphics Processing Units [PDF]

LECTURE NOTES IN COMPUTER SCIENCE, 2013
The use of graphics processing units for scientific computations is an emerging strategy that can significantly speed up various different algorithms. In this review, we discuss advances made in the field of computational physics, focusing on classical ...
A. Asadchev, A. Castro, A. Harju, A. Harju, A. McAdams, A.G. Anderson, A.P. Lyubartsev, A.W. Götz, B.L. Tembre, C. Bonati, C. McNeile, C.M. Isborn, D.J. Hardy, E. Darve, G. Bhanot, G. Egri, G. Kresse, H.J. Rothe, I. Montvay, I. Samish, I. Ufimtsev, I.S. Ufimtsev, I.S. Ufimtsev, I.S. Ufimtsev, J. Enkovaara, J. Gao, J. Hubbard, J.A. Anderson, J.A. McCammon, J.E. Stone, J.S. Meredith, K. Esler, K. Moreland, K. Yasuda, K. Yasuda, L. Genovese, L. Genovese, L. Greengard, L. Gu, L. Ha, M. Bordag, M. Göckeler, M. Hasenbusch, M. Hutchinson, M. Macedonia, M.C. Gutzwiller, M.C. Payne, M.P. Allen, N. Cardoso, N. Goodnight, N. Luehr, N.A. Gumerov, P. Giannozzi, P. Kipfer, P. Petreczky, R. Parr, R.D. Mawhinney, R.D. Skeel, R.G. Belleman, S. Hakala, S. Ihnatsenka, S. Maintz, T. Shirakawa, T. Siro, T. Takahashi, T.W. Chiu, V. Rokhlin, V. Springel, W. Jia, W. Kohn, W.M.C. Foulkes, X. Andrade, Y. Aoki, Y. Chen, Z. Fodor   +74 more
core   +5 more sources

Real-Time Simulation of a Cerebellar Scaffold Model on Graphics Processing Units [PDF]

Frontiers in Cellular Neuroscience, 2021
Large-scale simulation of detailed computational models of neuronal microcircuits plays a prominent role in reproducing and predicting the dynamics of the microcircuits. To reconstruct a microcircuit, one must choose neuron and synapse models, placements,
Rin Kuriyama, Claudia Casellato, Egidio D'Angelo, Egidio D'Angelo, Tadashi Yamazaki   +4 more
doaj   +2 more sources

Fast Knowledge Graph Completion using Graphics Processing Units [PDF]

Journal of Parallel and Distributed Computing, 2023
Knowledge graphs can be used in many areas related to data semantics such as question-answering systems, knowledge based systems. However, the currently constructed knowledge graphs need to be complemented for better knowledge in terms of relations. It is called knowledge graph completion.
Chun-Hee Lee, Dong‐oh Kang, Hwa Jeon Song   +2 more
openalex   +3 more sources

Fast docking on graphics processing units via Ray-Casting. [PDF]

PLoS ONE, 2013
Docking Approach using Ray Casting (DARC) is structure-based computational method for carrying out virtual screening by docking small-molecules into protein surface pockets.
Karen R Khar, Lukasz Goldschmidt, John Karanicolas   +2 more
doaj   +2 more sources

Accelerating the Gillespie τ-Leaping Method using graphics processing units. [PDF]

PLoS ONE, 2012
The Gillespie τ-Leaping Method is an approximate algorithm that is faster than the exact Direct Method (DM) due to the progression of the simulation with larger time steps. However, the procedure to compute the time leap τ is quite expensive.
Ivan Komarov, Roshan M D'Souza, Jose-Juan Tapia   +2 more
doaj   +2 more sources

Accelerating large-scale protein structure alignments with graphics processing units [PDF]

BMC Research Notes, 2012
Background Large-scale protein structure alignment, an indispensable tool to structural bioinformatics, poses a tremendous challenge on computational resources.
Pang Bin, Zhao Nan, Becchi Michela, Korkin Dmitry, Shyu Chi-Ren   +4 more
doaj   +2 more sources

permGPU: Using graphics processing units in RNA microarray association studies [PDF]

BMC Bioinformatics, 2010
Background Many analyses of microarray association studies involve permutation, bootstrap resampling and cross-validation, that are ideally formulated as embarrassingly parallel computing problems. Given that these analyses are computationally intensive,
George Stephen L, Jung Sin-Ho, Shterev Ivo D, Owzar Kouros   +3 more
doaj   +2 more sources

LOOP PARALLELIZATION AUTOMATION FOR GRAPHICS PROCESSING UNITS

Information, Computing and Intelligent systems, 2020
A technology that allows extending GPU capabilities to deal with data volumes that outfit internal GPU’s memory capacity is proposed. It involves loop tiling and data serialization and can be applied to utilize clusters consisting of several GPUs. Applicability criterion is specified and a semi-automatic proof-of-concept software tool is implemented ...
А.Yu. Doroshenko, Olexii Beketov, Olena Yatsenko   +2 more
openalex   +5 more sources