BarraCUDA - a fast short read sequence aligner using graphics processing units [PDF]
BMC Research Notes, 2012 Background With the maturation of next-generation DNA sequencing (NGS) technologies, the throughput of DNA sequencing reads has soared to over 600 gigabases from a single instrument run.
Klus Petr +7 more
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FamSeq: a variant calling program for family-based sequencing data using graphics processing units. [PDF]
PLoS Computational Biology, 2014 Various algorithms have been developed for variant calling using next-generation sequencing data, and various methods have been applied to reduce the associated false positive and false negative rates.
Gang Peng, Yu Fan, Wenyi Wang
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GPUmotif: an ultra-fast and energy-efficient motif analysis program using graphics processing units. [PDF]
PLoS ONE, 2012 Computational detection of TF binding patterns has become an indispensable tool in functional genomics research. With the rapid advance of new sequencing technologies, large amounts of protein-DNA interaction data have been produced.
Pooya Zandevakili, Ming Hu, Zhaohui Qin
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Acceleration of Signal Processing Algorithms in Seekers Using Graphics Processing Units [PDF]
Problemy Mechatroniki, 2019 The paper presents a discussion on the issue of possible acceleration of radiolocation signal processing algorithms in seekers using graphics processing units.
Piotr TUREK
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Accelerating NTRU Encryption with Graphics Processing Units [PDF]
International Journal of Networked and Distributed Computing (IJNDC), 2014 Lattice based cryptography is attractive for its quantum computing resistance and efficient encryption/ decryption process. However, the Big Data issue has perplexed most lattice based cryptographic systems since the overall processing is slowed down too
Tianyu Bai +4 more
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Graphics Processing Units [PDF]
Geographic Information Science & Technology Body of Knowledge, 2013 Contains fulltext : 116954.pdf (Author’s version preprint ) (Closed access)
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Optimization of Advanced Encryption Standard on Graphics Processing Units
IEEE Access, 2021 Graphics processing units (GPUs) are specially designed for parallel applications and perform parallel operations much faster than central processing units (CPUs).
Cihangir Tezcan
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Comparative study of the implementation of the Lagrange interpolation algorithm on GPU and CPU using CUDA to compute the density of a material at different temperatures [PDF]
SHS Web of Conferences, 2021 Graphics Processing Units (GPUs) are microprocessors attached to graphics cards, which are dedicated to the operation of displaying and manipulating graphics data. Currently, such graphics cards (GPUs) occupy all modern graphics cards.
Rtal Youness, Hadjoudja Abdelkader
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Fast infrared radiative transfer calculations using graphics processing units: JURASSIC-GPU v2.0 [PDF]
Geoscientific Model Development, 2022 Remote sensing observations in the mid-infrared spectral region (4–15 µm) play a key role in monitoring the composition of the Earth's atmosphere. Mid-infrared spectral measurements from satellite, aircraft, balloons, and ground-based instruments provide
P. F. Baumeister, L. Hoffmann
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MrBayes on a Graphics Processing Unit [PDF]
Bioinformatics, 2011 Abstract Motivation: Bayesian phylogenetic inference can be used to propose a ‘tree of life’ for a collection of species whose DNA sequences are known. While there are many packages available that implement Bayesian phylogenetic inference, such as the popular MrBayes, running these programs poses significant computational challenges ...
Jianfu, Zhou +4 more
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