Results 161 to 170 of about 138,927 (255)

metaWEPP: leveraging biobank-scale intra-species phylogenies for near-haplotype resolution in metagenomic analysis. [PDF]

NAR Genom Bioinform
Gangwar P, Xu Q, Seangmany J, Katte P, Turakhia Y.   +4 more
europepmc   +1 more source

Parasites at the Summit: Unexpected Geographic Distribution of the Blood Parasite Lineage Found in the Endangered Giant Lizard of Tenerife

Integrative Zoology, EarlyView.
We combined microscopic screening and molecular phylogenetic analyses to characterize blood parasites infecting Gallotia intermedia from the coastal cliffs of Montaña de Guaza and to place these infections in a broader biogeographic context. We detected apicomplexan parasites of the genus Karyolysus infecting 53.6% of G.
Rodrigo Megía‐Palma, Gonzalo Albaladejo‐Robles, Gemma Palomar, Javier Martínez, Anamarija Žagar, Alejandro Escánez‐Pérez, Miguel A. Carretero, Wiesław Babik, Santiago Merino   +8 more
wiley   +1 more source

Comparisons Between Large‐Scale Genomic Variants and SNPs in Driving Population Divergence and Local Adaptation

Integrative Zoology, EarlyView.
Candidate genes identified from SNPs, indels, and SVs exhibited limited shared genes, suggesting that diverse variant types capture complementary aspects of the adaptive landscape. Our results underscore the importance of incorporating multiple types of genomic variation to achieve a more comprehensive understanding of evolutionary processes.
Qianghui Zhu, Hongrui Lv, Yalin Cheng, Shangyu Wang, Dezhi Zhang, Yan Hao, Gang Song, Fumin Lei   +7 more
wiley   +1 more source

Haplotype-resolved 3D genome maps reveal RNAPII-mediated allelic regulation in hybrid rice. [PDF]

aBIOTECH
Luan S, Gao R, Chen G, Liu C, Li D, Xue Z, Zhang Y, Li Y, Ding C, Liu B, Liu Y, Yan J, Foda MF, Li X, Ouyang W.   +14 more
europepmc   +1 more source

Maximizing eDNA detections of rare marine organisms: A case study of a delphinid species

Methods in Ecology and Evolution, EarlyView.
Abstract Environmental DNA (eDNA) is an emerging tool for surveying marine organisms. Advances in molecular assay designs and bioinformatic methods provide new opportunities for detecting rare species; however, overcoming methodological challenges of rare species detection remains an important obstacle for the widespread deployment of eDNA methods for ...
Nastassia V. Patin, Eiren K. Jacobson, Zachary Gold, Amy M. Van Cise, Julie Dinasquet, Bryce Ellman, Robert H. Lampe, Anne Schulberg, Noelle Bowlin, Ryan Freedman, Erin Satterthwaite, Andrew E. Allen, Brice X. Semmens   +12 more
wiley   +1 more source

Pervasive context-dependent effects in the genetic architecture of complex and quantitative traits revealed by a powerful multiparent mapping population in yeast. [PDF]

PLoS Genet
Cromie GA, Lo RS, Ames L, Morgan TS, Owens K, Clark AE, Timour MS, Ashmead J, Tang M, Kutz JN, Akey JM, Dudley AM.   +11 more
europepmc   +1 more source

From fluke to fragment: A multifaceted method for molecular sex identification and mitochondrial haplotyping from environmental DNA samples

Methods in Ecology and Evolution, EarlyView.
Abstract Environmental DNA (eDNA) analyses have become a powerful tool for non‐invasive biodiversity monitoring, yet the applicability of population‐genetic approaches to environmental samples remains largely unexplored. Even when genetic traces originate from a single individual, low target DNA concentrations and amplification or sequencing artefacts ...
Lauren Kelly Rodriguez, Sandra Schallhart, Philipp Hobmeier, Thomas G. Curran, Sergi Pérez‐Jorge, Rui Prieto, Cláudia Oliveira, Mónica A. Silva, Bettina Thalinger   +8 more
wiley   +1 more source

Interhaplotype Inversions and Repeat Expansion in the Sexually Deceptive Orchid Chiloglottis trapeziformis. [PDF]

Genome Biol Evol
Zhang Z, Jones A, Schwessinger B, Peakall R, Wong D.   +4 more
europepmc   +1 more source

Genotyping Contemporary Captive and Historical Wild Western Lowland Gorillas Indicates Captive Breeding Is Maintaining Genetic Diversity in a Critically Endangered Primate

Animal Conservation, EarlyView.
Captive populations of threatened species risk losing genetic diversity over time. We evaluated the genetic status of contemporary captive western lowland gorillas (Gorilla gorilla gorilla) at Howletts and Port Lympne and compared this with specimens from a historical wild population.
Jaimie Morris, Tony King, John Hills, Simon C. Harvey, Jane Hopper, Rodrigo Vega   +5 more
wiley   +1 more source