cDNA cloning and molecular modeling of procerain B, a novel cysteine endopeptidase isolated from Calotropis procera. [PDF]
PLoS ONE, 2013 Procerain B, a novel cysteine protease (endopeptidase) isolated from Calotropis procera belongs to Asclepiadaceae family. Purification of the enzyme, biochemical characterization and potential applications are already published by our group.
Abhay Narayan Singh +2 more
doaj +1 more source
Homology modeling of the spatial structure of HydSL hydrogenase from purple sulphur bacterium Thiocapsa roseopersicina BBS [PDF]
Компьютерные исследования и моделирование, 2013 The results of homology modeling of HydSL, a NiFe-hydrogenase from purple sulphur bacterium Thiocapsa roseopersicina BBS are presented in this work. It is shown that the models have larger confidence level than earlier published ones; a full-size model ...
Azat Vadimovich Abdullatypov +1 more
doaj +1 more source
Insights to ligand binding to the monoamine transporters – from homology modeling to LeuBAT and dDAT
Frontiers in Pharmacology, 2015 Understanding of drug binding to the human biogenic amine transporters is essential to explain the mechanism of action of these pharmaceuticals but more importantly to be able to develop new and improved compounds to be used in the treatment of ...
Heidi eKoldsø +2 more
doaj +1 more source
Structure and function prediction of human homologue hABH5 of _E. coli_ ALKB5 using in silico approach [PDF]
, 2011 Newly discovered human homologues of ALKB protein have shown the activity of DNA damaging drugs, used for cancer therapy. Little is known about the structure and function of hABH5, one of the members of this superfamily.
Ambarish Sharan Vidyarthi +2 more
core +3 more sources
Modeling non-homologous end joining [PDF]
Journal of Theoretical Biology, 2011 Non-homologous end joining (NHEJ) is an important DNA repair pathway for DNA double-strand breaks. Several proteins, including Ku, DNA-PKcs, Artemis, XRCC4/Ligase IV and XLF, are involved in the NHEJ for the DNA damage detection, DNA free end processing and ligation. The classical model of NHEJ is a sequential model in which DNA-PKcs is first recruited
Yongfeng, Li, Francis A, Cucinotta
openaire +2 more sources
A quality metric for homology modeling: the H-factor
BMC Bioinformatics, 2011 Background The analysis of protein structures provides fundamental insight into most biochemical functions and consequently into the cause and possible treatment of diseases.
di Luccio Eric, Koehl Patrice
doaj +1 more source
Structure of the 40S ribosomal subunit of Plasmodium falciparum by homology and de novo modeling
Acta Pharmaceutica Sinica B, 2017 Generation of three dimensional structures of macromolecules using in silico structural modeling technologies such as homology and de novo modeling has improved dramatically and increased the speed by which tertiary structures of organisms can be ...
Harrison Ndung'u Mwangi +4 more
doaj +1 more source
Novel Scaffolds for Modulation of NOD2 Identified by Pharmacophore-Based Virtual Screening
Biomolecules, 2022 Nucleotide-binding oligomerization domain-containing protein 2 (NOD2) is an innate immune pattern recognition receptor responsible for the recognition of bacterial peptidoglycan fragments.
Samo Guzelj +2 more
doaj +1 more source
Critical assessment of methods of protein structure prediction: Progress and new directions in round XI [PDF]
, 2016 Modeling of protein structure from amino acid sequence now plays a major role in structural biology. Here we report new developments and progress from the CASP11 community experiment, assessing the state of the art in structure modeling. Notable points
Fidelis, Krzysztof +4 more
core +1 more source
Homology Modeling of Transporter Proteins
, 2023 Membrane transporter proteins are divided into channels/pores and carriers and constitute protein families of physiological and pharmacological importance. Several presently used therapeutic compounds elucidate their effects by targeting membrane transporter proteins, including anti-arrhythmic, anesthetic, antidepressant, anxiolytic and diuretic drugs.
Sylte, Ingebrigt +2 more
openaire +3 more sources