Results 51 to 60 of about 1,206,425 (150)

Utilization of Benchtop Next Generation Sequencing Platforms Ion Torrent PGM and MiSeq in Noninvasive Prenatal Testing for Chromosome 21 Trisomy and Testing of Impact of In Silico and Physical Size Selection on Its Analytical Performance.

PLoS ONE, 2015
ObjectivesThe aims of this study were to test the utility of benchtop NGS platforms for NIPT for trisomy 21 using previously published z score calculation methods and to optimize the sample preparation and data analysis with use of in silico and physical
Gabriel Minarik, Gabriela Repiska, Michaela Hyblova, Emilia Nagyova, Katarina Soltys, Jaroslav Budis, Frantisek Duris, Rastislav Sysak, Maria Gerykova Bujalkova, Barbora Vlkova-Izrael, Orsolya Biro, Balint Nagy, Tomas Szemes   +12 more
doaj   +1 more source

RESTseq Ion Torrent PGM sequencing run - read length histogram

, 2013
example read length histogram from an Ion Torrent run (316 chip) of a RESTseq restriction fragment ...
Eckart Stolle (470156)
core   +1 more source

Targeted Next Generation Sequencing as a Reliable Diagnostic Assay for the Detection of Somatic Mutations in Tumours Using Minimal DNA Amounts from Formalin Fixed Paraffin Embedded Material. [PDF]

PLoS ONE, 2016
Targeted Next Generation Sequencing (NGS) offers a way to implement testing of multiple genetic aberrations in diagnostic pathology practice, which is necessary for personalized cancer treatment.
Wendy W J de Leng, Christa G Gadellaa-van Hooijdonk, Françoise A S Barendregt-Smouter, Marco J Koudijs, Ies Nijman, John W J Hinrichs, Edwin Cuppen, Stef van Lieshout, Robert D Loberg, Maja de Jonge, Emile E Voest, Roel A de Weger, Neeltje Steeghs, Marlies H G Langenberg, Stefan Sleijfer, Stefan M Willems, Martijn P Lolkema   +16 more
doaj   +1 more source

Identification of Genetic Mutations in Human Lung Cancer by Targeted Sequencing

Cancer Informatics, 2015
Lung cancer remains the most prevalent malignancy and the primary cause of cancer-related deaths worldwide. Unique mutations patterns can be found in lung cancer subtypes, in individual cancers, or within a single tumor, and drugs that target these ...
Hongxiang Feng, Xiaowei Wang, Zhenrong Zhang, Chuanning Tang, Hua Ye, Lindsey Jones, Feng Lou, Dandan Zhang, Shouwen Jiang, Hong Sun, Haichao Dong, Guangchun Zhang, Zhiyuan Liu, Zhishou Dong, Baishuai Guo, He Yan, Chaowei Yan, Lu Wang, Ziyi Su, Yangyang Li, Vijayalakshmi Nandakumar, Xue F. Huang, Si-Yi Chen, Deruo Liu   +23 more
doaj   +1 more source

Ion torrent data

, 2016
Raw Ion Torrent reads in FASTQ format; scripts associated with the bioinformatics pipeline; BWA alignments in SAM format; raw SNP reports in VCF and BCF format; the filtered SNP report used to construct consensus sequences; an overview of the number of ...
Judit Vörös (2580991), Wielstra, Ben, Vörös, Judit, Jan W. Arntzen (132377), Ben Wielstra (132374), Arntzen, Jan W.   +5 more
core   +1 more source

Next-generation sequencing of drug resistant Mycobacterium tuberculosis clinical isolates in low-incidence countries

Инфекция и иммунитет, 2020
Drug resistant tuberculosis (TB), especially multidrug (MDR) and extensively drug-resistant (XDR) TB, is still a serious problem in global TB control.
E. Sodja, N. Toplak, S. Koren, M. Kovač, S. Truden, M. Žolni-Dovč   +5 more
doaj   +1 more source

Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding. [PDF]

PLoS ONE, 2014
Direct sequencing of total plant DNA using next generation sequencing technologies generates a whole chloroplast genome sequence that has the potential to provide a barcode for use in plant and food identification.
Marta Brozynska, Agnelo Furtado, Robert James Henry   +2 more
doaj   +1 more source

RESTseq - example of a library sequenced on a Ion Torrent - trimming of barcodes

, 2013
RESTseq - example of a library sequenced on a Ion Torrent - trimming of ...
Eckart Stolle (470156)
core   +1 more source

Prehistoric mainland New Zealand sea lion mitogenome Ion Torrent NGS raw sequences

, 2016
Prehistoric mainland New Zealand sea lion mitogenome Ion Torrent NGS raw ...
Collins, Catherine, Stanton, Jo-Ann, Anderson, Christian, Justin Maxwell (3318624), Alan Tennyson (3318627), Bruce Robertson (368044), Lisa Matisoo-Smith (3318636), Jo-Ann Stanton (447505), Waters, Jonathan, Ian Smith (20961), Horsburgh, Ann, Rawlence, Nic, Michael Knapp (70927), Paul Scofield (3247077), Matisoo-Smith, Lisa, Robertson, Bruce, Knapp, Michael, Smith, Ian, Ann Horsburgh (3318633), Scofield, Paul, Maxwell, Justin, Christian Anderson (3318630), Jonathan Waters (3242988), Catherine Collins (186960), Tennyson, Alan, Nic Rawlence (3318621)   +25 more
core   +1 more source

RESTseq - example of a library sequenced on a Ion Torrent - read(=fragment) length distribution

, 2013
RESTseq - example of a library sequenced on a Ion Torrent - read(=fragment) length ...
Eckart Stolle (470156)
core   +1 more source