Results 21 to 30 of about 33,509 (214)

Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments

BMC Bioinformatics, 2004
Background With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than gene content because two strains of an organism may share the same set of ...
Tcherepanov Vasily, Roper Rachel L, Smith Alex J, Brodie Ryan, Upton Chris   +4 more
doaj   +1 more source

Graphic Model for Shop Floor Simulation and Control in the Context of Industry 5.0

Applied Sciences, 2023
Industry 5.0 changes the paradigm of the current production model, with repercussions throughout the value chain, and opens up opportunities for new approaches that include reducing waste to optimize the use of the planet’s resources. This paper proposes
Nuno Fernandes, João-Paulo Barros, Rogerio Campos-Rebelo   +2 more
doaj   +1 more source

Upgraded Thoth: Software for Data Visualization and Statistics

Analytics, 2023
Thoth is a free desktop/laptop software application with a friendly graphical user interface that facilitates routine data-visualization and statistical-calculation tasks for astronomy and astrophysical research (and other fields where numbers are ...
Russ R. Laher, Frank J. Masci, Luisa M. Rebull, Steven D. Schurr, Wendy Burt, Anastasia Laity, Melanie Swain, David L. Shupe, Steve Groom, Benjamin Rusholme, Mih-Seh Kong, John C. Good, Varoujan Gorjian, Rachel Akeson, Benjamin J. Fulton, David R. Ciardi, Sean Carey   +16 more
doaj   +1 more source

Accessing the SEED Genome Databases via Web Services API: Tools for Programmers

BMC Bioinformatics, 2010
Background The SEED integrates many publicly available genome sequences into a single resource. The database contains accurate and up-to-date annotations based on the subsystems concept that leverages clustering between genomes and other clues to ...
Vonstein Veronika, Overbeek Ross, Olson Robert, Cuevas Daniel, Akhter Sajia, Disz Terry, Stevens Rick, Edwards Robert A   +7 more
doaj   +1 more source

An efficient annotation and gene-expression derivation tool for Illumina Solexa datasets

BMC Research Notes, 2010
Background The data produced by an Illumina flow cell with all eight lanes occupied, produces well over a terabyte worth of images with gigabytes of reads following sequence alignment.
Matthews Benjamin F, Tremblay Arianne, Hosseini Parsa, Alkharouf Nadim W   +3 more
doaj   +1 more source

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data

BMC Genomics, 2012
Background The procedural aspects of genome sequencing and assembly have become relatively inexpensive, yet the full, accurate structural annotation of these genomes remains a challenge.
Peterson Elena S, McCue Lee Ann, Schrimpe-Rutledge Alexandra C, Jensen Jeffrey L, Walker Hyunjoo, Kobold Markus A, Webb Samantha R, Payne Samuel H, Ansong Charles, Adkins Joshua N, Cannon William R, Webb-Robertson Bobbie-Jo M   +11 more
doaj   +1 more source

Montsalvat: Intel SGX Shielding for GraalVM Native Images [PDF]

, 2023
The popularity of the Java programming language has led to its wide adoption in cloud computing infrastructures. However, Java applications running in untrusted clouds are vulnerable to various forms of privileged attacks. The emergence of trusted execution environments (TEEs) such as Intel SGX mitigates this problem.
arxiv   +1 more source

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

BMC Genomics, 2006
Background Since DNA sequencing has become easier and cheaper, an increasing number of closely related viral genomes have been sequenced. However, many of these have been deposited in GenBank without annotations, severely limiting their value to ...
Upton Chris, Ehlers Angelika, Tcherepanov Vasily   +2 more
doaj   +1 more source

Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries. [PDF]

PLoS ONE, 2015
Tn-seq is a high throughput technique for analysis of transposon mutant libraries. Tn-seq Explorer was developed as a convenient and easy-to-use package of tools for exploration of the Tn-seq data.
Sina Solaimanpour, Felipe Sarmiento, Jan Mrázek   +2 more
doaj   +1 more source

GeneLibrarian: an effective gene-information summarization and visualization system

BMC Bioinformatics, 2006
Background Abundant information about gene products is stored in online searchable databases such as annotation or literature. To efficiently obtain and digest such information, there is a pressing need for automated information-summarization and ...
Liu Heng-Hui, Shin Jyh-Wei, Chiang Jung-Hsien, Chin Chong-Liang   +3 more
doaj   +1 more source