Results 21 to 30 of about 519,644 (350)
Bridging Java Annotations and UML Profiles with JUMP
, 2014 UML profiles support annotations at the modeling level. However, current modeling tools lack the capabilities to generate such annotations required for the programming level, which is desirable for reverse engineering and for- ward engineering scenarios. To overcome this shortcoming, we defined an effec- tive conceptual mapping between Java annotations
Alexander Bergmayr +3 more
openalex +2 more sources
Jurnal Biodjati, 2023 Scientists are performing various measurements to overcome the COVID-19 pandemic. The genomic mutations of SARS-CoV-2 can change their pathogenicity, infectivity, transmission, and antigenicity.
Anwar Rovik, Clearensia Ade Bina Noviani
doaj +1 more source
LoopRNA – Java Module for RNA Structure Annotation
Comptes rendus de l’Acade'mie bulgare des Sciences, 2018 Georgi Minkov +3 more
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WImpiBLAST: web interface for mpiBLAST to help biologists perform large-scale annotation using high performance computing. [PDF]
PLoS ONE, 2014 The function of a newly sequenced gene can be discovered by determining its sequence homology with known proteins. BLAST is the most extensively used sequence analysis program for sequence similarity search in large databases of sequences.
Parichit Sharma, Shrikant S Mantri
doaj +1 more source
Logical Methods in Computer Science, 2012 Exchanging mutable data objects with untrusted code is a delicate matter because of the risk of creating a data space that is accessible by an attacker. Consequently, secure programming guidelines for Java stress the importance of using defensive copying
Thomas Jensen +2 more
doaj +1 more source
TCW: transcriptome computational workbench. [PDF]
PLoS ONE, 2013 BACKGROUND: The analysis of transcriptome data involves many steps and various programs, along with organization of large amounts of data and results. Without a methodical approach for storage, analysis and query, the resulting ad hoc analysis can lead ...
Carol Soderlund +3 more
doaj +1 more source
BG7: a new approach for bacterial genome annotation designed for next generation sequencing data. [PDF]
PLoS ONE, 2012 BG7 is a new system for de novo bacterial, archaeal and viral genome annotation based on a new approach specifically designed for annotating genomes sequenced with next generation sequencing technologies.
Pablo Pareja-Tobes +4 more
doaj +1 more source
Beyond Annotations: A Proposal for Extensible Java (XJ) [PDF]
2008 Eighth IEEE International Working Conference on Source Code Analysis and Manipulation, 2008 The XMF system is based on a bespoke language that includes some features that are key to Language Oriented Programming: grammars; syntax classes; parsers; quasi-quotes. This paper discusses various technologies and approaches for LOP and concludes that standardization is one of the key features that will bring LOP and Domain Specific Languages to the ...
Clark, Anthony +2 more
openaire +2 more sources
PanTools v3: functional annotation, classification and phylogenomics
Bioinform., 2022 Summary The ever-increasing number of sequenced genomes necessitates the development of pangenomic approaches for comparative genomics. Introduced in 2016, PanTools is a platform that allows pangenome construction, homology grouping and pangenomic read ...
Eef M. Jonkheer +8 more
semanticscholar +1 more source
On Verifying Resource Contracts using Code Contracts
, 2014 In this paper we present an approach to check resource consumption contracts using an off-the-shelf static analyzer. We propose a set of annotations to support resource usage specifications, in particular, dynamic memory consumption constraints.
Castaño, Rodrigo +4 more
core +6 more sources