Results 31 to 40 of about 519,644 (350)
GeneViTo: Visualizing gene-product functional and structural features in genomic datasets
BMC Bioinformatics, 2003 Background The availability of increasing amounts of sequence data from completely sequenced genomes boosts the development of new computational methods for automated genome annotation and comparative genomics.
Promponas Vasilis J +3 more
doaj +1 more source
The Proteogenomic Mapping Tool
BMC Bioinformatics, 2011 Background High-throughput mass spectrometry (MS) proteomics data is increasingly being used to complement traditional structural genome annotation methods.
Dandass Yoginder S +8 more
doaj +1 more source
jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units. [PDF]
PLoS ONE, 2011 BACKGROUND: DNA barcoding and other DNA sequence-based techniques for investigating and estimating biodiversity require explicit methods for associating individual sequences with taxa, as it is at the taxon level that biodiversity is assessed.
Martin Jones +2 more
doaj +1 more source
Atomic: an open-source software platform for multi-level corpus annotation [PDF]
, 2014 This paper presents Atomic, an open-source platform-independent desktop application for multi-level corpus annotation. Atomic aims at providing the linguistic community with a user-friendly annotation tool and sustainable platform through its focus on ...
Bierkandt, Lennart +4 more
core +5 more sources
Creating and Visualizing Test Data from Programming Exercises
Informatics in Education, 2007 Automatic assessment of programming exercises is typically based on testing approach. Most automatic assessment frameworks execute tests and evaluate test results automatically, but the test data generation is not automated. No matter that automatic test
Petri IHANTOLA
doaj +1 more source
GarlicESTdb: an online database and mining tool for garlic EST sequences
BMC Plant Biology, 2009 Background Allium sativum., commonly known as garlic, is a species in the onion genus (Allium), which is a large and diverse one containing over 1,250 species. Its close relatives include chives, onion, leek and shallot.
Choi Sang-Haeng +9 more
doaj +1 more source
Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression. [PDF]
PLoS ONE, 2014 Sequencing the transcriptome can answer various questions such as determining the transcripts expressed in a given species for a specific tissue or condition, evaluating differential expression, discovering variants, and evaluating allele-specific ...
Carol A Soderlund +2 more
doaj +1 more source
BMC Genomics, 2008 Background The MIAME and MAGE-OM standards defined by the MGED society provide a specification and implementation of a software infrastructure to facilitate the submission and sharing of data from microarray studies via public repositories.
Ivens Alasdair, Qureshi Matloob
doaj +1 more source
BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes
Microorganisms, 2023 Whole-genome sequencing (WGS) of bacterial pathogens is widely conducted in microbiological, medical, and clinical research to explore genetic insights that could impact clinical treatment and molecular epidemiology.
Arnon Chukamnerd +5 more
doaj +1 more source
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
BMC Bioinformatics, 2004 Background With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than gene content because two strains of an organism may share the same set of ...
Tcherepanov Vasily +4 more
doaj +1 more source