Results 1 to 10 of about 7,146 (159)

Tree Reconciliation Methods for Host-Symbiont Cophylogenetic Analyses [PDF]

Life, 2022
Phylogenetic reconciliation is a fundamental method in the study of pairs of coevolving species. This paper provides an overview of the underlying theory of reconciliation in the context of host-symbiont cophylogenetics, identifying some of the major ...
Ran Libeskind-Hadas
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Hierarchical clustering of maximum parsimony reconciliations [PDF]

BMC Bioinformatics, 2019
Background Maximum parsimony reconciliation in the duplication-transfer-loss model is a widely-used method for analyzing the evolutionary histories of pairs of entities such as hosts and parasites, symbiont species, and species and genes. While efficient
Ross Mawhorter, Ran Libeskind-Hadas
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Maximum parsimony reconciliation in the DTLOR model [PDF]

BMC Bioinformatics, 2021
Background Analyses of microbial evolution often use reconciliation methods. However, the standard duplication-transfer-loss (DTL) model does not account for the fact that species trees are often not fully sampled and thus, from the perspective of ...
Jingyi Liu, Ross Mawhorter, Nuo Liu, Santi Santichaivekin, Eliot Bush, Ran Libeskind-Hadas   +5 more
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xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes [PDF]

BMC Bioinformatics, 2023
To understand genome evolution in a group of microbes, we need to know the timing of events such as duplications, deletions and horizontal transfers. A common approach is to perform a gene-tree / species-tree reconciliation.
Nuo Liu, Tonatiuh A. Gonzalez, Jacob Fischer, Chan Hong, Michelle Johnson, Ross Mawhorter, Fabrizia Mugnatto, Rachael Soh, Shifa Somji, Joseph S. Wirth, Ran Libeskind-Hadas, Eliot C. Bush   +11 more
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An efficient exact algorithm for computing all pairwise distances between reconciliations in the duplication-transfer-loss model [PDF]

BMC Bioinformatics, 2019
Background Maximum parsimony reconciliation in the duplication-transfer-loss model is widely used in studying the evolutionary histories of genes and species and in studying coevolution of parasites and their hosts and pairs of symbionts. While efficient
Santi Santichaivekin, Ross Mawhorter, Ran Libeskind-Hadas   +2 more
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Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model [PDF]

BMC Bioinformatics, 2019
Background Reconciliation methods are widely used to explain incongruence between a gene tree and species tree. However, the common approach of inferring maximum parsimony reconciliations (MPRs) relies on user-defined costs for each type of event, which ...
Ross Mawhorter, Nuo Liu, Ran Libeskind-Hadas, Yi-Chieh Wu   +3 more
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Abstract 248: Structural Analysis of Aspiration Catheters and Procedural Outcomes: An Analysis of the SVIN Registry

Stroke: Vascular and Interventional Neurology, 2023
Introduction Rapid expansion of mechanical thrombectomy and swift manufacturing development has translated into significant evolution of large bore catheter technology.
Jaydevsinh N. Dolia, Mahmoud H. Mohammaden, Mohamed A. Tarek, Mateus D. Monteiro, Jonathan A. Grossberg, Aqueel H. Pabaney, Michael V. Frankel, Dinesh E. Jillella, Ameer V. Hassan, Wondwossen E. G. Tekle, Alexandros G. Georgiadis, Hamzah Saei, Santiago Ortega Gutierrez, Juan Vivanco‐Suarez, Milagros Galecio‐Castillo, Aaron Rodriguez‐Calienes, Shahram Majidi, Johanna Fifi, Stavros Matsoukas, James Siegler, Mary Penckofer, Ankit Rana, Sunil Sheth, Sergio Salazar Maroni, Thanh Nguyen, Mohamad Abdalkader, Italo Linfante, Guilherme Dabus, Brijesh Mehta, Joy Sessa, Mouhammad Jumaa, Rebecca Sugg, Guillermo Linares, Alhamza Al‐Bayati, David Libeskind, Raul Noguiera, Diogo Haussen   +36 more
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Jane: a new tool for the cophylogeny reconstruction problem [PDF]

Algorithms for Molecular Biology, 2010
Background This paper describes the theory and implementation of a new software tool, called Jane, for the study of historical associations. This problem arises in parasitology (associations of hosts and parasites), molecular systematics (associations of
Ovadia Yaniv, Fielder Daniel, Conow Chris, Libeskind-Hadas Ran   +3 more
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Structural Analysis of Aspiration Catheters and Procedural Outcomes: An Analysis of the SVIN Registry [PDF]

Stroke: Vascular and Interventional Neurology
Background Rapid expansion of mechanical thrombectomy and swift manufacturing development has translated into significant evolution of large‐bore catheter technology.
Jaydevsinh N. Dolia, Mahmoud H. Mohammaden, Mohamed A. Tarek, Mateus Damiani, Jonathan A. Grossberg, Aqueel Pabaney, Michael Frankel, Dinesh V. Jillella, Ameer E. Hassan, Wondwossen G. Tekle, Alexandros Georgiadis, Hamzah Saei, Santiago Ortega‐Gutierrez, Juan Vivanco‐Suarez, Milagros Galecio‐Castillo, Aaron Rodriguez‐Calienes, Shahram Majidi, Johanna Fifi, Stavros Matsoukas, James E. Siegler, Mary Penckofer, Ankit Rana, Sunil A. Sheth, Sergio A. Salazar Marioni, Thanh N. Nguyen, Mohamad Abdalkader, Italo Linfante, Guilherme Dabus, Brijesh P. Mehta, Joy Sessa, Mouhammad Jumaa, Rebecca Sugg, Guillermo Linares, Alhamza R. Al‐Bayati, David S. Libeskind, Raul G. Nogueira, Diogo C. Haussen   +36 more
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Fragments in Libeskind and Wittgenstein

Contemporary Aesthetics, 2012
My paper explores the similar role that fragments play in Wittgenstein’s later philosophy and in Libeskind’s architecture. The fragment is an infraction of traditional linear approaches to architecture and philosophy and thus affords an alternative ...
Rossen Ventzislavov
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