Results 1 to 10 of about 457,545 (69)

Specific suppression of long terminal repeat retrotransposon mobilization in plants [PDF]

, 2022
The tissue culture passage necessary for the generation of transgenic plants induces genome instability. This instability predominantly involves the uncontrolled mobilization of LTR retrotransposons (LTR-TEs), which are the most abundant class of mobile ...
Adulyanukosol, Natthawut, Brestovitsky, Anna, Catoni, Marco, Cho, Jungnam, Iwasaki, Mayumi, Paszkowski, Jerzy   +5 more
core   +2 more sources

Whole Genome Resequencing Reveals Natural Target Site Preferences of Transposable Elements in Drosophila melanogaster [PDF]

, 2012
Transposable elements are mobile DNA sequences that integrate into host genomes using diverse mechanisms with varying degrees of target site specificity.
A Levy, A Miyao, AG Holman, AL Goodman, AR Quinlan, AS Fiston-Lavier, B Charlesworth, C Berry, C Biemont, C Llorens, C Stewart, Casey M. Bergman, D Ellinghaus, D Reiss, DA O'Brochta, DH Fawcett, DJ Witherspoon, DP Grandgenett, EL Beall, GC Langridge, GC Liao, GN Maertens, H Quesneville, I Kondrychyn, I Mori, Jason E. Stajich, JD Gawronski, JH Whalen, JJ Collins, JM Richardson, JS Kaminker, K O'Hare, L Haren, L Viggiano, LN Nefedova, M Bernstein, M Tudor, MJ Koudijs, NJ Bowen, NL Craig, O Delelis, P Dunsmuir, PJ Merriman, Raquel S. Linheiro, RC Iskow, RS Linheiro, T van Opijnen, T Wicker, T Zerjal, TB Sackton, TD Schneider, TFC Mackay, TH Eickbush, TJ Vigdal, TK Starr, V Ellison, VV Kapitonov, VW Keng, WC Wang, WJ Kent, X Wu, Y Moalic   +61 more
core   +9 more sources

Targeted Derepression of the Human Immunodeficiency Virus Type 1 Long Terminal Repeat by Pyrrole-Imidazole Polyamides [PDF]

, 2002
The host factor LSF represses the human immunodeficiency virus type 1 long terminal repeat (LTR) by mediating recruitment of histone deacetylase. We show that pyrrole-imidazole polyamides targeted to the LTR can specifically block LSF binding both in ...
Coull, Jason J., Dervan, Peter B., He, Guocheng, Margolis, David M., Melander, Christian, Rucker, Victor C.   +5 more
core   +1 more source

Repetitive DNA and plant domestication: variation in copy number and proximity to genes of LTR-retrotransposons among wild and cultivated sunflower (Helianthus annuus) genotypes. [PDF]

, 2015
The sunflower (Helianthus annuus) genome contains a very large proportion of transposable elements, especially long terminal repeat retrotransposons. However, knowledge on the retrotransposon-related variability within this species is still limited.
BARGHINI, ELENA, CAVALLINI, ANDREA, GIORDANI, TOMMASO, MASCAGNI, FLAVIA, NATALI, LUCIA, Rieseberg, L. H.   +5 more
core   +2 more sources

A machine learning based framework to identify and classify long terminal repeat retrotransposons [PDF]

, 2018
Transposable elements (TEs) are repetitive nucleotide sequences that make up a large portion of eukaryotic genomes. They can move and duplicate within a genome, increasing genome size and contributing to genetic diversity within and across species ...
Blockeel, Hendrik, Carareto, Claudia MA, Cerri, Ricardo, Costa, Eduardo, Fischer, Carlos N, Ramon, Jan, Schietgat, Leander, Vens, Celine   +7 more
core   +5 more sources

Long terminal repeat retrotransposons of Mus musculus [PDF]

, 2004
BACKGROUND: Long terminal repeat (LTR) retrotransposons make up a large fraction of the typical mammalian genome. They comprise about 8% of the human genome and approximately 10% of the mouse genome.
McCarthy, Eugene M, McDonald, John F
core   +2 more sources

Infinitely Repeated Quantum Games and Strategic Efficiency [PDF]

Quantum Inf Process 20, 387 (2021), 2020
Repeated quantum game theory addresses long term relations among players who choose quantum strategies. In the conventional quantum game theory, single round quantum games or at most finitely repeated games have been widely studied, however less is known for infinitely repeated quantum games.
arxiv   +1 more source

Long terminal repeat retrotransposons of Oryza sativa [PDF]

, 2002
BACKGROUND: Long terminal repeat (LTR) retrotransposons constitute a major fraction of the genomes of higher plants. For example, retrotransposons comprise more than 50% of the maize genome and more than 90% of the wheat genome.
Liu, Jingdong, Lizhi, Gao, McCarthy, Eugene M, McDonald, John F   +3 more
core   +2 more sources

cAMP Signaling Enhances HIV-1 Long Terminal Repeat (LTR)-directed Transcription and Viral Replication in Bone Marrow Progenitor Cells. [PDF]

, 2017
CD34+ hematopoietic progenitor cells have been shown to be susceptible to HIV-1 infection, possibly due to a low-level expression of CXCR4, a coreceptor for HIV-1 entry.
Banerjee, Anupam, Krebs, Fred C., Li, Luna, Nonnemacher, Michael R., Pirrone, Vanessa, Wigdahl, Brian   +5 more
core   +6 more sources

Identification of a Protein That Recognizes a Distal Negative Regulatory Element within the Mouse Mammary Tumor Virus Long Terminal Repeat [PDF]

, 1999
The mouse mammary tumor virus (MMTV) long terminal repeat contains a distal negative regulatory element (dNRE) that selectively represses activity of the proviral promoter in the absence of steroid hormone receptor-mediated activation.
Kang, Chang-Joong, Peterson, David O.
core   +1 more source