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Strong, Low-Barrier Hydrogen Bonds May Be Available to Enzymes [PDF]
Biochemistry, 2014 The debate over the possible role of strong, low-barrier hydrogen bonds in stabilizing reaction intermediates at enzyme active sites has taken place in the absence of an awareness of the upper limits to the strengths of low-barrier hydrogen bonds involving amino acid side chains. Hydrogen bonds exhibit their maximal strengths in isolation, i.e., in the
Kit H. Bowen +4 more
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Turning Low Barrier Hydrogen Bonds on and Off
Journal of the Chinese Chemical Society, 2010AbstractThe hydrogen bond in the [HDihH‐Fda]+ ion (HDih: 4,5‐dihydro‐1H‐imidazole, Fda: 1‐fluoro‐N,N‐dimethylmethaneamine) can be an ordinary single well hydrogen bond (HB) or a low barrier hydrogen bond (LBHB) depending on the orientation of the CH2F group in the Fda molecule.
Chin-Hui Yu, Timm Lankau
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Journal of Physical Chemistry B, 2016
We report a combined solid-state (1H, 2H, 13C, 17O) NMR and plane-wave density functional theory (DFT) computational study of the O···H···O low-barrier hydrogen bonds (LBHBs) in two 1,3-diketone compounds: dibenzoylmethane (1) and curcumin (2).
X. Kong +7 more
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We report a combined solid-state (1H, 2H, 13C, 17O) NMR and plane-wave density functional theory (DFT) computational study of the O···H···O low-barrier hydrogen bonds (LBHBs) in two 1,3-diketone compounds: dibenzoylmethane (1) and curcumin (2).
X. Kong +7 more
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The strength of a low-barrier hydrogen bond in water
Tetrahedron Letters, 2002Abstract There are large differences between the acidity of the enol of the acyclic diketone, 2,4-pentanedione and those of two cyclic diketones, 1,3-cyclopentanedione and 1,3-cyclohexanedione. Computational studies have demonstrated that these differences are largely due to the strength of the internal low-barrier hydrogen bond (LBHB) in the enol of
Freeman M. Wong +2 more
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Science, 1995
Proteins contain mainly weak, conventional hydrogen bonds; however, a few enzymes have low barrier hydrogen bonds (LBHBs) in transition state analog complexes. Hydrogen bonds display variations in physicochemical properties including length, spectroscopic characteristics, and strength.
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Proteins contain mainly weak, conventional hydrogen bonds; however, a few enzymes have low barrier hydrogen bonds (LBHBs) in transition state analog complexes. Hydrogen bonds display variations in physicochemical properties including length, spectroscopic characteristics, and strength.
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Low-Barrier Hydrogen Bonds and Enzymatic Catalysis
Archives of Biochemistry and Biophysics, 2000Short, strong (low barrier) hydrogen bonds occur when the pK values of the atoms sharing the proton are similar. The overall distance is 2.5 A or less, the deuterium fractionation factor is less than 0.5, the proton NMR chemical shift can approach 20 ppm, and deuterium or tritium substitution causes an up-field change in the chemical shift.
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Absorption Wavelength Along Chromophore Low-Barrier Hydrogen Bonds
SSRN Electronic Journal, 2021In low-barrier hydrogen bonds (H-bonds), the pKa values for the H-bond donor and acceptor moieties are nearly equal, whereas the redox potential values depend on the H+ position. Spectroscopic details of low-barrier H-bonds remain unclear. Here, we report the absorption wavelength along low-barrier H-bonds in protein environments, using a quantum ...
Keisuke Saito +2 more
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Journal of the American Chemical Society, 2006
To address questions regarding the mechanism of serine protease catalysis, we have solved two X-ray crystal structures of alpha-lytic protease (alphaLP) that mimic aspects of the transition states: alphaLP at pH 5 (0.82 A resolution) and alphaLP bound to
C. Fuhrmann, M. Daugherty, D. Agard
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To address questions regarding the mechanism of serine protease catalysis, we have solved two X-ray crystal structures of alpha-lytic protease (alphaLP) that mimic aspects of the transition states: alphaLP at pH 5 (0.82 A resolution) and alphaLP bound to
C. Fuhrmann, M. Daugherty, D. Agard
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On the Possibility of Detecting Low Barrier Hydrogen Bonds with Kinetic Measurements
Journal of Chemical Information and Computer Sciences, 2003Recent experimental evidence has pointed to the possible presence of a short, strong hydrogen bond in the enzyme-substrate transition states in some biochemical reactions. To date, most experimental measures of these short, strong hydrogen bonds have monitored their equilibrium properties. In this work we show that kinetic measurements can also be used
Michael Messina +3 more
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Follow the protons: a low-barrier hydrogen bond unifies the mechanisms of the aspartic proteases.
Accounts of Chemical Research, 2001Seven proton transfers in five steps participate in a catalytic turnover of an aspartic protease. The Rosetta Stone for elucidating their role is a low-barrier hydrogen bond that holds the two aspartic carboxyls in a coplanar conformation.
D. Northrop
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