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PucciDB: A LTR-retrotransposon library of Pucciniales
2021Les rouilles sont des champignons qui infectent les plantes, et en particulier certaines cultures importantes telles que le blé et le café. Il existe plusieurs génomes de la rouille séquencés et libérés dans des bases de données comme NCBI, mais il n'y a pas d'études approfondies sur la dynamique et les structures des éléments transposables et des ...
Simón Orozco-Arias +5 more
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Vertebrate LTR Retrotransposons of the Tf1/Sushi Group
Journal of Molecular Evolution, 2001LTR retrotransposons of the Tf1/sushi group from a diversity of vertebrates, including fish, amphibians, and mammals (humans, mice, and others), are described as full-length or partial elements. These elements are compared, and the mechanisms involved in self-priming of reverse transcriptase and programmed phase shifting are inferred.
M, Butler +4 more
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Horizontal transfer of non-LTR retrotransposons in vertebrates
Genetica, 1999Since their discovery in family Bovidae (bovids), Bov-B LINEs, believed to be order-specific SINEs, have been found in all ruminants and recently also in Viperidae snakes. The distribution and the evolutionary relationships of Bov-B LINEs provide an indication of their origin and evolutionary dynamics in different species.
D, Kordis, F, Gubensek
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The Chironomus thummi genome contains a non-LTR retrotransposon
Molecular and General Genetics MGG, 1993Nineteen recombinant phages containing DNA from the region of Balbiani ring a (BRa), which develops on chromosome IV in cells of the special lobe of the Chironomus thummi salivary gland, were isolated from a Chironomus thummi genomic library. Three of the clones contained transposable element sequences that hybridized to more than 100 sites on all four
A G, Blinov +4 more
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[Plant active LTR retrotransposons: a review].
Sheng wu gong cheng xue bao = Chinese journal of biotechnology, 2017Long terminal repeat (LTR) retrotransposons are mobile DNA sequences that ubiquitously exist in eukaryotic genomes. They replicate themselves in the genome by copy-paste mechanism with RNA as medium. In higher plants, many active LTR retrotransposons have been applied to analyze molecular marker technology, genetic tagging, insertion mutation and gene ...
Linlin, Liang, Mingbing, Zhou
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Classification of LTR Retrotransposons via Interaction Prediction
2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)Transposable Elements (TEs) are genetic sequences that can relocate within the genome, thus promoting genetic diversity. Classifying TEs in eukaryotes involves a hierarchy formed by classes, subclasses, orders, superfamilies, families, and subfamilies. According to this taxonomy, LTR retrotransposons (LTR-RT) constitute an order.
Silvana C. S. Cardoso +4 more
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Ty3 and Related LTR-Retrotransposon Reverse Transcriptases
2022Jennifer T. Miller, Stuart F.J. Le Grice
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