Results 61 to 70 of about 2,752,382 (159)

A comparison of classical phenomenological, hybrid neural network, and high performance ROM FE2 models for open‐cell foams: Efficiency, accuracy, and flexibility

GAMM-Mitteilungen, Volume 48, Issue 2, June 2025.
ABSTRACT Computational homogenization has become an attractive path to determine the macroscopic inelastic behavior of a structure from the knowledge of the behavior of its (usually simpler) constituents, using a Representative Volume Element (RVE) at the microscale.
Nils Lange, Alexander Malik, Martin Abendroth, Geralf Hütter, Bjoern Kiefer   +4 more
wiley   +1 more source

The microbiologist's guide to metaproteomics

iMeta, Volume 4, Issue 3, June 2025.
Metaproteomics within the multi‐omics framework provides a comprehensive view of microbial systems by identifying proteins, quantifying their levels, detecting posttranslational modifications (PTMs), mapping protein–protein interactions (PPIs), and localizing proteins.
Tim Van Den Bossche, Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, Céline Henry, Robert L. Hettich, Tanja Holstein, Pratik D. Jagtap, Nico Jehmlich, Jonghyun Kim, Manuel Kleiner, Benoit J. Kunath, Xuxa Malliet, Lennart Martens, Subina Mehta, Bart Mesuere, Zhibin Ning, Alessandro Tanca, Sergio Uzzau, Pieter Verschaffelt, Jing Wang, Paul Wilmes, Xu Zhang, Xin Zhang, Leyuan Li, The Metaproteomics Initiative   +31 more
wiley   +1 more source

Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small‐animal imaging

Magnetic Resonance in Medicine, Volume 93, Issue 6, Page 2507-2534, June 2025.
Abstract Small‐animal diffusion MRI (dMRI) has been used for methodological development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. The steps from animal setup and monitoring, to acquisition, analysis, and interpretation are complex, with many decisions that may ultimately affect what questions ...
Ileana O. Jelescu, Francesco Grussu, Andrada Ianus, Brian Hansen, Rachel L. C. Barrett, Manisha Aggarwal, Stijn Michielse, Fatima Nasrallah, Warda Syeda, Nian Wang, Jelle Veraart, Alard Roebroeck, Andrew F. Bagdasarian, Cornelius Eichner, Farshid Sepehrband, Jan Zimmermann, Lucas Soustelle, Christien Bowman, Benjamin C. Tendler, Andreea Hertanu, Ben Jeurissen, Marleen Verhoye, Lucio Frydman, Yohan van de Looij, David Hike, Jeff F. Dunn, Karla Miller, Bennett A. Landman, Noam Shemesh, Adam Anderson, Emilie McKinnon, Shawna Farquharson, Flavio Dell'Acqua, Carlo Pierpaoli, Ivana Drobnjak, Alexander Leemans, Kevin D. Harkins, Maxime Descoteaux, Duan Xu, Hao Huang, Mathieu D. Santin, Samuel C. Grant, Andre Obenaus, Gene S. Kim, Dan Wu, Denis Le Bihan, Stephen J. Blackband, Luisa Ciobanu, Els Fieremans, Ruiliang Bai, Trygve B. Leergaard, Jiangyang Zhang, Tim B. Dyrby, G. Allan Johnson, Julien Cohen‐Adad, Matthew D. Budde, Kurt G. Schilling   +56 more
wiley   +1 more source

Exact and Heuristic Solution Approaches for the Cluster Deletion Problem on General Graphs

Networks, Volume 85, Issue 4, Page 351-367, June 2025.
ABSTRACT A cluster graph is a disjoint union of cliques, obtained by clustering the nodes of a given network and then removing the edges between nodes assigned to different clusters. The Cluster Deletion problem asks for the smallest subset of edges to be removed from a network in order to produce a cluster graph, which is equivalent to determining the
Giuseppe Ambrosio, Raffaele Cerulli, Domenico Serra, Carmine Sorgente, Ugo Vaccaro   +4 more
wiley   +1 more source

Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single‐cell RNA sequencing analyses

Quantitative Biology, Volume 13, Issue 2, June 2025.
Abstract The transcriptome, the complete set of RNA molecules within a cell, plays a critical role in regulating physiological processes. The advent of RNA sequencing (RNA‐seq) facilitated by Next Generation Sequencing (NGS) technologies, has revolutionized transcriptome research, providing unique insights into gene expression dynamics.
Jorge A. Tzec‐Interián, Daianna González‐Padilla, Elsa B. Góngora‐Castillo   +2 more
wiley   +1 more source

Forging the iron‐net: Towards a quantitative understanding of microbial communities via siderophore‐mediated interactions

Quantitative Biology, Volume 13, Issue 2, June 2025.
Abstract Iron is a critical yet limited nutrient for microbial growth. To scavenge iron, most microbes produce siderophores—diverse small molecules with high iron affinities. Different siderophores are specifically recognized and uptaken by corresponding recognizers, enabling targeted interventions and intriguing cheater‐producer dynamics.
Shaohua Gu, Jiqi Shao, Ruolin He, Guanyue Xiong, Zeyang Qu, Yuanzhe Shao, Linlong Yu, Di Zhang, Fanhao Wang, Ruichen Xu, Peng Guo, Ningbo Xi, Yinxiang Li, Yanzhao Wu, Zhong Wei, Zhiyuan Li   +15 more
wiley   +1 more source

Major Shifts in Equatorial Atlantic and Pacific Calcareous Nannofossil Assemblages Across the Early Eocene Climatic Optimum (EECO; ∼53–49 Ma)

Paleoceanography and Paleoclimatology, Volume 40, Issue 6, June 2025.
Abstract The early Eocene Climatic Optimum (EECO; ∼53–49 Ma) was the warmest sustained global warming episode of the Cenozoic, accompanied by major alterations in terrestrial and marine biota. Here we detail changes in low‐latitude calcareous nannofossil assemblages at two tropical sites in the equatorial Atlantic (ODP Site 1258) and Pacific (ODP Site ...
Joseph D. Asanbe, Jorijntje Henderiks
wiley   +1 more source

Obesity Alters the Vascular Morphology and VEGF‐A Signaling in Adipose Tissue

FASEB BioAdvances, Volume 7, Issue 6, June 2025.
Obesity alters cell geometry and vessel morphology in mice adipose tissue by increasing adipocyte size by 78% and reducing vessel density by 51%, while vessel size and capillary basement membrane thickness remain unchanged. Obesity also affects angiogenesis, which is mediated by vascular endothelial growth factor (VEGF) binding kinetics.
Yunjeong Lee, Keith Lionel Tukei, Yingye Fang, Shobhan Kuila, Xinming Liu, Princess I. Imoukhuede   +5 more
wiley   +1 more source

An enrichment‐based capture method from nuclear environmental DNA presents new opportunities for population genomics: A case study on the common frog

Methods in Ecology and Evolution, Volume 16, Issue 6, Page 1106-1115, June 2025.
Abstract Population genetics is a powerful tool for studying evolutionary processes and informing conservation biology. Traditional approaches typically rely on tissue sampling, which poses challenges in aquatic environments where specimen collection is often difficult.
Stéphanie Manel, Jérémy Gauthier, Laura Benestan, Marie‐Pierre Dubois, Lola Romant, Bastien Macé, Morgane Bruno, Véronique Arnal, Guillaume Testud, Manon Garcia, Inés Carrasquer Puyal, Julia Bilat, Claude Miaud, Nadir Alvarez   +13 more
wiley   +1 more source

A new morphological phylogeny of Malacostraca comparing the application of character dependencies and implied weighting

Cladistics, Volume 41, Issue 3, Page 283-303, June 2025.
Abstract Using a new character matrix composed of revised matrices of previous analyses and new morphological findings, the phylogeny of Malacostraca (Pancrustacea) is analysed anew with 207 characters for 35 terminal taxa across all recognized orders. Particular emphasis was placed on methodological versatility, including different degrees of implied ...
Markus Grams, Ambrosio Torres, Christian S. Wirkner, Stefan Richter   +3 more
wiley   +1 more source