Results 61 to 70 of about 1,914 (167)

Real models for the framed little n$n$‐disks operads

open access: yesJournal of Topology, Volume 18, Issue 4, December 2025.
Abstract We study the action of the orthogonal group on the little n$n$‐disks operads. As an application we provide small models (over the reals) for the framed little n$n$‐disks operads. It follows in particular that the framed little n$n$‐disks operads are formal (over the reals) for n$n$ even and coformal for all n$n$.
Anton Khoroshkin, Thomas Willwacher
wiley   +1 more source

Accurate affinity models for SH2 domains from peptide binding assays and free‐energy regression

open access: yesProtein Science, Volume 34, Issue 11, November 2025.
Abstract Short linear peptide motifs play important roles in phosphotyrosine‐dependent signaling networks. They can act both as substrates of kinases and phosphatases and as ligands of peptide binding domains. SH2 domains bind specifically to tyrosine‐phosphorylated proteins, with the affinity of the interaction depending strongly on the flanking ...
Dejan Gagoski   +7 more
wiley   +1 more source

Comparative Dynamics Enables Discovery of Embedded Bacterial Ferredoxin Domains in Large Redox Enzymes

open access: yesProteins: Structure, Function, and Bioinformatics, Volume 93, Issue 11, Page 1973-1987, November 2025.
ABSTRACT Bacterial ferredoxins are small iron–sulfur binding proteins that function as soluble electron shuttles between redox enzymes in the cell. Their simple 2×(β–α–β) fold, central metabolic function, and ubiquity across all kingdoms of life have led to the proposal that ferredoxins were likely among the earliest proteins.
Jan A. Siess, Vikas Nanda
wiley   +1 more source

Threshold Concepts and Concept Networks in Evolution Education: An Experimental Intervention Study

open access: yesScience Education, Volume 109, Issue 6, Page 1583-1607, November 2025.
ABSTRACT This study analyzes the effect of different instructions on threshold concepts within material covering natural selection on students' use of concepts about evolution. Moreover, it examines students' use of concepts as interconnected networks when reasoning about natural selection and analyzes how these concepts relate to each other regarding ...
Helena Aptyka   +2 more
wiley   +1 more source

Time Series Embedding Methods for Classification Tasks: A Review

open access: yesExpert Systems, Volume 42, Issue 11, November 2025.
ABSTRACT Time series analysis has become crucial in various fields, from engineering and finance to healthcare and social sciences. Due to their multidimensional nature, time series often need to be embedded into a fixed‐dimensional feature space to enable processing with various machine learning algorithms.
Habib Irani   +3 more
wiley   +1 more source

An updated history of TDIF‐PXY signalling: a study in cell fate and tissue patterning

open access: yesNew Phytologist, Volume 248, Issue 3, Page 1154-1165, November 2025.
Summary Non‐cell autonomous signalling is a mechanism by which stem cells are maintained across the tree of life. In plants, many stem cell populations are regulated by peptide ligands related to CLAVATA3, which are secreted from one cell type and bind to the leucine‐rich repeat domain of a plasma‐membrane‐localised receptor kinase related to CLAVATA1 ...
Qing He   +3 more
wiley   +1 more source

Constraint‐based metabolic modeling reveals metabolic properties underpinning the unprecedented growth of Chlorella ohadii

open access: yesNew Phytologist, Volume 248, Issue 3, Page 1572-1583, November 2025.
Summary Comparative molecular and physiological analyses of organisms from one taxonomic group grown under similar conditions offer a strategy to identify gene targets for trait improvement. While this strategy can also be performed in silico using genome‐scale metabolic models for the compared organisms, we continue to lack solutions for the de novo ...
Fayaz Soleymani   +6 more
wiley   +1 more source

A Family of Higher‐Order Theories for Wave Propagation in One‐Dimensional Structural Elements

open access: yesInternational Journal for Numerical Methods in Engineering, Volume 126, Issue 19, 15 October 2025.
ABSTRACT This paper proposes a systematic framework for the development and classification of higher‐order theories for modeling wave propagation in one‐dimensional structural elements. Building upon and organizing the existing higher‐order models, a generalized approach is introduced to construct an entire family of such theories with controllable ...
Wiktor Waszkowiak   +3 more
wiley   +1 more source

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