Results 31 to 40 of about 5,271 (207)

Improved gene tree error correction in the presence of horizontal gene transfer [PDF]

, 2014
Motivation: The accurate inference of gene trees is a necessary step in many evolutionary studies. Although the problem of accurate gene tree inference has received considerable attention, most existing methods are only applicable to gene families ...
Bansal, Bapteste, Burleigh, Chen, Choi, David, Delsuc, Doyon, Durand, Eric J. Alm, Felsenstein, Goodman, Guindon, Górecki, Hallett, Harding, Koonin, Lerat, Lerat, Li, Libeskind-Hadas, Liu, Ma, Manolis Kellis, Mukul S. Bansal, Nguyen, Organ, Ovadia, Page, Rambaut, Rasmussen, Rutschmann, Saitou, Salter, Sanderson, Sennblad, Shimodaira, Stamatakis, Stolzer, Storm, Thornton, Tofigh, Tofigh, Vilella, Wapinski, Whelan, Wu, Yang, Yi-Chieh Wu, Yule, Zhaxybayeva, Zhaxybayeva, Åkerborg   +52 more
core   +2 more sources

Machine‐Learning Decomposition Identifies a Big Two Structure in Human Personality with Distinct Neurocognitive Profiles

Advanced Science, EarlyView.
Using machine learning on a mega‐scale global dataset (n = 1,336,840) reveals a robust personality trait architecture beyond the Big Five. A Big Two model, broadly capturing social engagement and internal mentation, defines a geometric space that links personality to neurocognitive profiles.
Kaixiang Zhuang, Ji Chen, Jinfeng Han, Wei Cheng, Jiang Qiu, Jianfeng Feng, Simon Eickhoff, Deniz Vatansever   +7 more
wiley   +1 more source

Genome-scale phylogenetic analysis finds extensive gene transfer among Fungi [PDF]

, 2015
Although the role of lateral gene transfer is well recognized in the evolution of bacteria, it is generally assumed that it has had less influence among eukaryotes.
Boussau, Bastien, Daubin, Vincent, Davín, Adrián Arellano, Szöllősi, Gergely J., Tannier, Eric   +4 more
core   +4 more sources

Hierarchical Summary Statistics Encoding Across Primary Visual and Posterior Parietal Cortices

Advanced Science, EarlyView.
This study shows that mouse V1 simultaneously encodes the ensemble mean and variance of motion, providing a robust summary‐statistic representation that persists despite single‐neuron variability. These signals propagate to PPC, where they are transformed into abstract category representations during decision making.
Young‐Beom Lee, Oliver James, Gaeun Jung, Doyun Lee, Yee‐Joon Kim   +4 more
wiley   +1 more source

Exact reconciliation of undated trees [PDF]

, 2014
Reconciliation methods aim at recovering macro evolutionary events and at localizing them in the species history, by observing discrepancies between gene family trees and species trees.
Kelk, Steven, Scornavacca, Celine, van Iersel, Leo   +2 more
core   +1 more source

Marinomonas brasilensis sp. nov., isolated from the coral Mussismilia hispida, and reclassification of Marinomonas basaltis as a later heterotypic synonym of Marinomonas communis [PDF]

, 2011
A Gram-negative, aerobic bacterium, designated strain R-40503(T), was isolated from mucus of the reef-builder coral Mussismilia hispida, located in the Sao Sebastiao Channel, Sao Paulo, Brazil.
Alves, Anne Willems, Baumann, Eck, Fabiano L. Thompson, Goris, Ilse Cleenwerck, Luciane A. Chimetto, Marcelo Brocchi, Paul De Vos, Saitou, Savelkoul, Stackebrandt, van Landschoot, Willems   +14 more
core   +2 more sources

Leveraging Artificial Intelligence and Large Language Models for Cancer Immunotherapy

Advanced Science, EarlyView.
Cancer immunotherapy faces challenges in predicting treatment responses and understanding resistance mechanisms. Artificial intelligence (AI) and machine learning (ML) offer powerful solutions for cancer immunotherapy in patient stratification, biomarker discovery, treatment strategy optimization, and foundation model development.
Xinchao Wu, Mengtao Sun, Lusheng Li, Jieqiong Wang, Shibiao Wan   +4 more
wiley   +1 more source

Optimal Grazing Exclusion Duration to Enhance Soil Carbon Sequestration in Degraded Grasslands

Advanced Science, EarlyView.
Across China, grazing exclusion reaches the national mean soil organic carbon recovery benchmark sooner in high‐MAP regions (> 500 mm), but recovery is much slower where MAP < 300 mm. Scaling this strategy to 70% of China's degraded grasslands would sequester about 1.52 Pg of soil carbon over 10 years—roughly 17% of annual global fossil‐fuel emissions.
Bin Zhang, Chongzhi Sun, Dongmei Xue, Paul Christiaan Struik, Tongrui Zhang, Jiayue Liu, Tingting Xing, Ziyang Liu, Shiming Tang, Ke Jin   +9 more
wiley   +1 more source

Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting [PDF]

, 2013
Hybridization plays an important evolutionary role in several groups of organisms. A phylogenetic approach to detect hybridization entails sequencing multiple loci across the genomes of a group of species of interest, reconstructing their gene trees, and
Arnold, Bansal, Barton, Beiko, Bloomquist, Bordewich, Cranston, Degnan, Edwards, Felsenstein, Hobolth, Hudson, Huelsenbeck, Joly, Kingman, Kubatko, Kuo, Liu, Luay Nakhleh, MacLeod, Maddison, Maddison, Mallet, Mallet, Meng, Nakhleh, Nakhleh, Nakhleh, Nakhleh, Pollard, R. Matthew Barnett, Rambaut, Rannala, Rasmussen, Rieseberg, Rokas, Swofford, Syring, Takuno, Than, Than, Than, Than, Than, Than, White, Yu, Yu, Yu, Yu, Yu, Yun Yu   +51 more
core   +1 more source

Linking Plant Metabolomics with Fungal Functional Dynamics Reveals a Noncanonical S‐R‐C Adaptive Trajectory

Advanced Science, EarlyView.
Using field‐based holo‐omics, we demonstrate that developmental shifts in sorghum leaf metabolomes drive a noncanonical fungal succession from stress tolerators (S) through ruderals (R) to competitors (C). Antifungal metabolites in young leaves select for S strategists with expanded genomes, transient maltose pulses during flowering favor fast‐growing ...
Peilin Chen, John W. Taylor, Cheng Gao
wiley   +1 more source