Results 81 to 90 of about 24,742 (210)

Results of DNA metabarcoding.

, 2020
Results of DNA metabarcoding.
Shintaroh Ueda (157782), Aiko Saso (582522), Masahira Hattori (2579), Rikai Sawafuji (4046348), Wataru Suda (395421)   +4 more
core   +1 more source

Proficiency testing and cross-laboratory method comparison to support standardisation of diatom DNA metabarcoding for freshwater biomonitoring [Elektronisk resurs]

DNA metabarcoding of benthic diatoms has been successfully applied for biomonitoring at the national scale and can now be considered technically ready for routine application.
Sveriges lantbruksuniversitet., Kahlert, Maria,   +1 more
core   +1 more source

Metabarcoding of soil nematodes: the importance of taxonomiccoverage and availability of reference sequences in choosingsuitable marker(s)

, 2019
For many organisms, there is agreement on the specific genomic region used for developing barcode markers. With nematodes, however, it has been found that the COI region designated for most animals lacks the taxonomic coverage (ability to amplify a ...
Sapp,Melanie, Karssen,Gerrit, Sapp, Melanie, Back, Matthew,, Lawson, Rebecca, Back, Matthew, Back,Matthew, Thomas Prior, Rebecca Lawson, Ahmed,Mohammed, Ahmed, Mohammed, Adams,Ian, Back, Matthew Alan, Sapp, Melanie,, Mohammed Ahmed, Ian Adams, Ahmed, Mohammed,, Karssen, Gerrit, Lawson,Rebecca, Prior,Thomas, Karssen, Gerrit,, Lawson, Rebecca,, Gerrit Karssen, Adams, Ian, Prior, Thomas, Melanie Sapp, Prior, Thomas,, Adams, Ian,, Matthew Alan Back   +28 more
core   +1 more source

Combined water and detritus sampling is the most effective strategy to detect environmental DNA of macroinvertebrates in rivers

Ecological Indicators
Although environmental DNA (eDNA) metabarcoding technology has been increasingly applied in freshwater ecosystems, the effectiveness of conventional water sampling and other adaptive metabarcoding methods for detecting macroinvertebrates has not been ...
Kena Shi, Yajing He, Jiefeng Yu, Yongjing Zhao, Hongzhu Wang, Yongde Cui   +5 more
doaj   +1 more source

Biodiversity and Community Structure of Mesozooplankton in the Marine and Coastal National Park Areas of Korea

Diversity, 2020
Zooplankton communities are useful bioindicators that can provide information on the changes occurring in marine ecosystems. Therefore, investigation of zooplankton communities in marine and coastal national parks is essential.
Heesoo Kim, Chang-Rae Lee, Sang-kyu Lee, Seung-Yoon Oh, Won Kim   +4 more
doaj   +1 more source

Phytoplankton metabarcoding - 1st part

, 2023
The presentation, delivered at the BIOLAWEB Workshop "Metabarcoding of diatoms and phytoplankton for biomonitoring" (March 2023) introduces the biology, diversity, and traditional monitoring of phytoplankton in freshwater ecosystems.BIOLAWEB Workshop ...
Rimet, Frederic
core  

DBP Metabarcoding Pipeline (for metabarcoding data using nanopore) v1

This pipeline was developed to process MinION nanopore data output for metabarcoding purposes. The process begins with raw FASTQ data from nanopore base-calling output and includes several steps: quality filtering with NanoFilt, primer removal and length trimming with Cutadapt, artifact detection with Chimera, and building an Operational Taxonomic Unit
Muhammad Danie Al Malik, Ni Kadek Dita Cahyani, Aji Wahyu Anggoro   +2 more
openaire   +1 more source

Comparison of GoFish and metabarcoding.

, 2018
A. Number of detections by method for the 11 species and 34 samples shown in Fig 3. A detection refers to a positive GoFish or metabarcoding result for a single species in a single sample, which corresponds to one cell in Fig 3 grid.
Mark Y. Stoeckle (139976), Mithun Das Mishu (6069419), Zachary Charlop-Powers (2823827)   +2 more
core   +1 more source

Environmental DNA metabarcoding shows potential for monitoring meiofauna and marine nematodes diversity in mangrove ecosystems in China

Ecological Indicators
Mangrove ecosystems, located at the vital interface between land and sea, exhibit exceptionally high biodiversity. Meiofauna are key components in the food webs and nutrient cycles of mangrove ecosystems. However, the diversity of intertidal meiofauna is
Mingcheng Hu, Yuqing Guo, Fenfen Ji, Yijia Shih, Kai Liu, Xiangxiang Yi, Yuanxin Fan   +6 more
doaj   +1 more source

Unraveling Fish Community Diversity and Structure in the Yellow Sea: Evidence from Environmental DNA Metabarcoding and Bottom Trawling

Animals
The use of environmental DNA (eDNA) metabarcoding to analyze fish species diversity across different aquatic ecosystems is well documented. Nonetheless, there is a gap in validating eDNA metabarcoding studies on the diversity and structure of fish ...
Jinyong Zhang, Xiaoyu Cui, Lin Lin, Yuan Liu, Jinqing Ye, Weiyue Zhang, Hongjun Li   +6 more
doaj   +1 more source