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Predicting novel pathways in genome-scale metabolic networks
Biochemical Society Transactions, 2010Elementary-modes analysis has become a well-established theoretical tool in metabolic pathway analysis. It allows one to decompose complex metabolic networks into the smallest functional entities, which can be interpreted as biochemical pathways. This analysis has, in medium-size metabolic networks, led to the successful theoretical prediction of ...
Christoph Kaleta +2 more
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Biotechnology and Bioengineering, 2004
AbstractCentral carbon metabolism of the yeast Saccharomyces cerevisiae was analyzed using metabolic pathway analysis tools. Elementary flux modes for three substrates (glucose, galactose, and ethanol) were determined using the catabolic reactions occurring in yeast.
Kutlu O. Ulgen +2 more
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AbstractCentral carbon metabolism of the yeast Saccharomyces cerevisiae was analyzed using metabolic pathway analysis tools. Elementary flux modes for three substrates (glucose, galactose, and ethanol) were determined using the catabolic reactions occurring in yeast.
Kutlu O. Ulgen +2 more
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Analysis and visualization of metabolic pathways and networks: A hypegraph approach
IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI), 2014Metabolic pathways are series of chemical reactions occurring in a cell. Various graph-based models are used to represent metabolic data. However, diverse problems may arise from adopting these models. A more accurate modeling framework can be offered by hypergraphs.
Evaggelia M. Maniadi, Ioannis G. Tollis
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Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways
2007 IEEE 7th International Symposium on BioInformatics and BioEngineering, 2007Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, and potentially establishing evolutionary relations. Unfortunately, existing tools for mapping paths into general networks (PathBlast) or trees into tree networks allowing gaps
Qiong Cheng +2 more
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Pathway Engineering of the Plant Vitamin C Metabolic Network [PDF]
, 2007 Vitamin C (ascorbic acid, AsA) is an important primary metabolite of plants that functions as an antioxidant, an enzyme cofactor, and a cell-signalling modulator in a wide array of crucial physiological processes, including biosynthesis of the cell wall, secondary metabolites and phytohormones, stress resistance, photoprotection, cell division ...
Argelia Lorence, Craig L. Nessler
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Text Mining for Metabolic Pathways, Signaling Cascades, and Protein Networks
Science's STKE, 2005The complexity of the information stored in databases and publications on metabolic and signaling pathways, the high throughput of experimental data, and the growing number of publications make it imperative to provide systems to help the researcher navigate through these interrelated information resources.
Christian Blaschke +5 more
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An overview of real‐world data sources for oncology and considerations for research
Ca-A Cancer Journal for Clinicians, 2022Lynne T Penberthy +2 more
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Failing Forward: Stability of Transparent Electrodes Based on Metal Nanowire Networks
Advanced Materials, 2021Jeffrey C Grossman +2 more
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Soft Materials by Design: Unconventional Polymer Networks Give Extreme Properties
Chemical Reviews, 2021Hyunwoo Yuk, Shaoting Lin, Xiaoyu Chen
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