Results 171 to 180 of about 153,489 (289)

Metagenomes and metagenome-assembled genomes from ex vivo fecal incubations of six unique donors

Adrienne B. Narrowe, LinShu Liu, Johanna M. S. Lemons, Jenni Firrman, Karley K. Mahalak, Stef Deyaert, Aurélien Baudot, Pieter Van den Abbeele   +7 more
openalex   +1 more source

A Cross-Sectional Study of Dairy Cattle Metagenomes Reveals Increased Antimicrobial Resistance in Animals Farmed in a Heavy Metal Contaminated Environment [PDF]

, 2020
Natália Carrillo Gaeta, Emily Bean, Asha M. Miles, Daniel Ubriaco Oliveira Gonçalves de Carvalho, Mario Augusto Reyes Alemán, Jeferson Silva Carvalho, Lílian Gregory, Erika Ganda   +7 more
openalex   +1 more source

Disordered N‐termini enhance the thermostability of SGNH‐hydrolase family polyesterases

Protein Science, Volume 35, Issue 1, January 2026.
Abstract Polyesters are widely used plastics that persist in the environment due to their resistance to degradation. Microbial polyesterases potentially offer recycling and remediation solutions. However, most polyesterases lack the thermostability and catalytic efficiency required for practical application.
F. Hafna Ahmed, Lygie Esquirol, Santana Royan, Mitchell M. Birgan, Nigel G. French, Sophia Newton, Alessandro T. Caputo, Colin Scott   +7 more
wiley   +1 more source

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs, Model Ranking, and Deep Learning

Proteins: Structure, Function, and Bioinformatics, Volume 94, Issue 1, Page 167-182, January 2026.
ABSTRACT We present the methods and results of our protein complex and RNA structure predictions at CASP16. Our approach integrated multiple state‐of‐the‐art deep learning models with a consensus‐based scoring method. To enhance the depth of multiple sequence alignments (MSAs), we employed a large metagenomic sequence database.
Yuki Kagaya, Tsukasa Nakamura, Jacob Verburgt, Anika Jain, Genki Terashi, Pranav Punuru, Emilia Tugolukova, Joon Hong Park, Anouka Saha, David Huang, Daisuke Kihara   +10 more
wiley   +1 more source

BEREN: a bioinformatic tool for recovering giant viruses, polinton-like viruses, and virophages in metagenomic data. [PDF]

Bioinform Adv
Minch B, Moniruzzaman M.
europepmc   +1 more source

Metagenome-assembled genomes (MAGs) of the emerging pathogen Shewanella algae from enrichment of coastal seawater, sediment, and algae at St. John’s Island, Singapore

Jia Yee Ho, Dalong Hu, Rebecca J. Case, Yan Boucher   +3 more
openalex   +1 more source

An Improved Approach to Identify Bacterial Pathogens to Human in Environmental Metagenome

, 2020
Jihoon Yang, Adina Howe, Jae‐Jin Lee, Keunje Yoo, Joonhong Park   +4 more
openalex   +2 more sources

Post-weaning shifts in microbiome composition and metabolism revealed by over 25,000 pig gut metagenome assembled genomes [PDF]

, 2020
Daniela Gaio, Matthew Z. DeMaere, Kay Anantanawat, Toni A. Chapman, Steven P. Djordjevic, Aaron E. Darling   +5 more
openalex   +1 more source

Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers

Proteins: Structure, Function, and Bioinformatics, Volume 94, Issue 1, Page 51-78, January 2026.
ABSTRACT Accurate biomolecular structure prediction enables the prediction of mutational effects, the speculation of function based on predicted structural homology, the analysis of ligand binding modes, experimental model building, and many other applications.
Rachael C. Kretsch, Reinhard Albrecht, Ebbe S. Andersen, Hsuan‐Ai Chen, Wah Chiu, Rhiju Das, Jeanine G. Gezelle, Marcus D. Hartmann, Claudia Höbartner, Yimin Hu, Shekhar Jadhav, Philip E. Johnson, Christopher P. Jones, Deepak Koirala, Emil L. Kristoffersen, Eric Largy, Anna Lewicka, Cameron D. Mackereth, Marco Marcia, Michela Nigro, Manju Ojha, Joseph A. Piccirilli, Phoebe A. Rice, Heewhan Shin, Anna‐Lena Steckelberg, Zhaoming Su, Yoshita Srivastava, Liu Wang, Yuan Wu, Jiahao Xie, Nikolaj H. Zwergius, John Moult, Andriy Kryshtafovych   +32 more
wiley   +1 more source

metaFun: An analysis pipeline for metagenomic big data with fast and unified functional searches. [PDF]

Gut Microbes
Lee HG, Song JY, Yoon J, Chung Y, Kwon SK, Kim JF.   +5 more
europepmc   +1 more source