Results 171 to 180 of about 129,780 (292)

Metagenome Analysis

, 2006
The term “metagenomics” represents a combination of molecular and bioinformatic tools used to assess the genetic information of a community without prior cultivation of the individual species.
Meyerdierks, A., Glöckner, F.
core  

Functional Metagenomics Insights Into the Allium ampeloprasum Rhizosphere Microbiome Under Different Fertilization Regimes

MicrobiologyOpen, Volume 15, Issue 3, June 2026.
Shotgun metagenomic sequencing was used to characterize the functional potential of the Allium ampeloprasum rhizosphere microbiome under chemical fertilizer (G1), biofertilizer (G2), and unfertilized (Bulk) soil (G3) management practices. This study revealed that different fertilization regimes altered microbial functional profiles.
Oluwaseun Emmanuel Shittu, Ben Jesuorsemwen Enagbonma, Olubukola Oluranti Babalola   +2 more
wiley   +1 more source

Whole genome sequence of <i>Tsukamurella tyrosinosolvens</i> extracted from metagenome of human pleural fluid enriched in Mycobacteria Growth Indicator Tube. [PDF]

Microbiol Resour Announc
Moidu Jameela R, Kedare MM, Khan R, Dhankad N, Sinha RK, Zade A, Shah S, Chatterjee A.   +7 more
europepmc   +1 more source

Unveiling Marine Vesicle Uptake in Vibrio spp: Taxonomic and Environmental Insights

MicrobiologyOpen, Volume 15, Issue 3, June 2026.
Extracellular vesicles are involved in diverse functions in nature from microbial interactions to pathogenesis. Here, we investigate whether taxonomy represents a boundary that constrains the uptake of vesicles between different marine bacteria including ubiquitous Vibrio spp. involved in marine organism diseases, such as corals.
Nadefa Adda Nekrouf, Lucia Maestre‐Carballa, Monica Lluesma‐Gomez, Esther Rubio‐Portillo, Manuel Martinez‐Garcia   +4 more
wiley   +1 more source

Comparative Amplicon and Shotgun Metagenome Profiling of Soil Microbial Communities in Kauri Forests Affected by Phytophthora agathidicida. [PDF]

Environ Microbiol Rep
King Z, Buckley HL, Lear G, Seale B, Lee KC, Schwendenmann L, Lacap-Bugler DC.   +6 more
europepmc   +1 more source

Gut Microbiota Alterations Associated With Colonization by Multidrug‐Resistant Organisms in ICU Patients: First Systematic Review and Meta‐Analysis

MicrobiologyOpen, Volume 15, Issue 3, June 2026.
Microbiota profiling showed colonized critically ill patients had lower values of dominance/evenness (Simpson's index) and richness (Observed), reaching significantly lower values of information (mean difference in Shannon index = –1.18; 95% CI, –1.84 to –0.52; p < 0.001).
Andra‐Elena Goicea, Daniel‐Corneliu Leucuța, Constantin Bodolea   +2 more
wiley   +1 more source

The chromosomal genome sequence of the feather duster worm, <i>Sabellastarte</i> sp. h YS-2021 (Sabellida: Sabellidae) and its associated microbial metagenome sequences. [PDF]

Wellcome Open Res
Sun Y, Kei K, Qiu JW, Martín-Durán JM, Oatley G, Sinclair E, Aunin E, Gettle N, Santos C, Paulini M, Niu H, McKenna V, O'Brien R, Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team, Wellcome Sanger Institute Scientific Operations: Sequencing Operations, Wellcome Sanger Institute Tree of Life Core Informatics team, EBI Aquatic Symbiosis Genomics Data Portal Team, Aquatic Symbiosis Genomics Project Leadership.   +18 more
europepmc   +1 more source

Bacteriophages in the Rhizosphere: Roles in Nutrient Cycling, Bacterial Community Structure, and Animal‐Mediated Dispersal

MicrobiologyOpen, Volume 15, Issue 3, June 2026.
This review discusses bacteriophages' roles in soil ecosystems, highlighting their impact on nutrient cycling, plant health, and soil remediation, as well as animal‐mediated phage dispersal mechanisms. Overall, while bacteriophages have potential biotechnological applications, their negative effects on microbial functions and nutrient cycling highlight
Majid Komijani, Hassan Maddahi, Marzieh Rezaei, Mohammad Hussein Abnosi, Abdullah Khalaf Ahmed   +4 more
wiley   +1 more source

Thirteen metagenome-assembled genomes of <i>Paraglaciecola chathamensis</i> associated with the farmed red seaweeds <i>Porphyra dioica</i> and <i>Porphyra umbilicalis</i>. [PDF]

Microbiol Resour Announc
Pereira AC, Cortez F, Chaves G, Nanetti E, Leite RB, Mendes MC, Oliveira I, Abreu H, Martins M, Keller-Costa T, Costa R.   +10 more
europepmc   +1 more source

Tryptophan Metabolism and Aryl‐Hydrocarbon Receptor Agonists in the Gut Microbiome of People With Myalgic Encephalomyelitis/Chronic Fatigue Syndrome

MicrobiologyOpen, Volume 15, Issue 3, June 2026.
The gut microbiome of people with myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS) is investigated to identify changes in microbial tryptophan metabolism. We reveal a subcommunity of microbes that correlates with tryptophan metabolism that differs in structure and diversity and identify differences in stool indoles including aryl‐hydrocarbon
David J. Esteban, Brynn Conrad, Autumn Cullinan, Sharon Luong, Jason Albaum, Victoria Wilk   +5 more
wiley   +1 more source