Results 171 to 180 of about 138,246 (299)

Wastewater Metagenomic Reanalysis of Antibiotic Resistance Genes in Public Datasets from Türkiye (Ankara and Hatay). [PDF]

Antibiotics (Basel)
Kurt H.
europepmc   +1 more source

A Bacillus Phage From Bangladeshi Soil, Phage APU1: Genomic Characterisation and Comparative Genomic Analysis

Environmental Microbiology Reports, Volume 18, Issue 5, October 2026.
Phage APU1, isolated from Bangladeshi agricultural soil, is a high‐quality, computationally predicted lytic Bacillus phage with a 153,847‐bp genome and no detected antimicrobial resistance or virulence factor genes. Comparative genomics identified APU1 as a genomically distinct member of a related Bacillus phage group.
Arefeen Haider, Tasnuva Jahan Esha, Sezanur Rahman, Jannat Akther, Naimul Islam Faysal, Tahsin Khan, Shakhinur Islam Mondal, Anowara Begum, Sudhangshu Kumar Biswas, Mustafizur Rahman, Mohammad Jubair   +10 more
wiley   +1 more source

VicMAG, an open-source tool for visualizing circular metagenome-assembled genomes highlighting bacterial virulence and antimicrobial resistance. [PDF]

NAR Genom Bioinform
Tsuda Y, Tanizawa Y, Vu TMH, Nishimura Y, Shintani M, Abe H, Hasebe F, Kasuga I, Nagao M, Suzuki M.   +9 more
europepmc   +1 more source

A Single‐Cell Transcriptomic Atlas of the Ovine Rumen Microbiome Characterizes Lineage‐Specific Metabolic Shifts Associated with Host Heat Tolerance

Advanced Science, Volume 13, Issue 51, 14 September 2026.
An optimized single‐cell transcriptomic framework profiles over 60 000 cells to map the ovine rumen microbiome, partitioning the ecosystem into seven cross‐species functional clusters. In heat‐resistant hosts, a lineage‐specific metabolic shift in Anaerovibrio lipolyticus toward a highly glycolytic phenotype contributes to a “nutritional sparing ...
Sanbao Zhang, Qinyang Jiang, Junjie Ma, Jianwei Zou, Fan Wang, Feifei Lv, Yanna Huang, Yongcheng Wang, Ziye Xu   +8 more
wiley   +1 more source

Composting Restructures Chicken Manure Viral Communities and Attenuates Virus-Associated Antibiotic Resistance Signals: Paired Metagenome and Virome Analyses. [PDF]

Viruses
Liu W, Wang Y, Ma J, Liang X, Yang L.
europepmc   +1 more source

Metagenomic Association Uncovers Host Genotype‐Structured Rhizobacterial Networks and Novel Taxa That Enhance Soybean Salt Tolerance

Advanced Science, Volume 13, Issue 53, 24 September 2026.
An STI‐guided metagenomic association framework links soybean salt‐tolerance phenotypes with rhizosphere microbiome composition and network organization in natural saline soils. The approach identifies candidate beneficial taxa, including Thalassospira xiamenensis, and provides an efficient strategy for mining stress‐protective microbes from native ...
Yu Luo, Feng‐Li Kang, Qi‐Min Li, Wei‐Cai Yang   +3 more
wiley   +1 more source

annoreport: an interactive tool for metagenome annotation. [PDF]

Bioinform Adv
Ridge K, Adams BJ.
europepmc   +1 more source

Livestock Multi‐Omics Integration: A Systematic Framework From Statistical Association to Causal Interpretation

Advanced Science, Volume 13, Issue 50, 7 September 2026.
A three‐tier livestock multi‐omics framework resolves four typical analytical pitfalls. Moving from statistical association through machine learning preprocessing to triple‐modal causal inference, it converts omics results into genomic selection and gene editing strategies to achieve One Health, underpinned by multi‐omics data, multimodal sequencing ...
Jiying Wen, Zhongyu Wang, Jieping Huang, Fen Li, Ningbo Chen, Yun Ma   +5 more
wiley   +1 more source

Deployable high-fidelity metagenome binning at scale with QuickBin. [PDF]

Commun Biol
Bushnell B, Villada JC.
europepmc   +1 more source

Metagenome-assembled genomes from time-series samples of artificial seawater aquarium water. [PDF]

Microbiol Resour Announc
Mori K, Nishimura Y, Ijichi M, Iwahashi Y, Sudo S, Yoshizawa S.   +5 more
europepmc   +1 more source