Results 111 to 120 of about 30,341 (174)

Psuedokinetics arising from the upscaling of equilibrium

, 2006
Multicomponent contaminant transport models in groundwater are typically based on assumptions of local geochemical equilibrium on the grid scale. In heterogenous systems there may be significant coupling between transport processes and geochemical ...
Binning, Philip John, Celia, M.A., Li, Li, Binning, Philip, Celia, Michael, Li, L.   +5 more
core   +1 more source

Precision of Hi-C-Based Metagenome-Assembled Genome Reconstruction across Binning Pipelines

International audienceChromosomal conformation capture (3C) approaches, such as Hi-C, are increasingly implemented to reconstruct metagenome-assembled genomes (MAGs) from complex microbial communities, but the precision of Hi-C-based binning has not been
Lukaszewicz, Martyna, Stalder, Thibault, Top, Eva, Ridenhour, Benjamin   +3 more
core   +1 more source

LorBin: efficient binning of long-read metagenomes by multiscale adaptive clustering and evaluation

Nature Communications
Long-read sequencing has transformed metagenomics and improved the quality of metagenome-assembled genomes (MAGs). However, current binning methods struggle with identifying unknown species and managing imbalanced species distributions.
Wei Xue, Zuo Liu, Yaozhong Zhang, Waseem Raza, Yarong Li, Li Jiang, Ye Tao, Jun Qian, Jousset Alexandre, Fang-Jie Zhao, Yangchun Xu, Fritz Sedlazeck, Qirong Shen, Gaofei Jiang, Zhong Wei   +14 more
doaj   +1 more source

Cultivation-independent high-quality microbial genome reconstruction from environmental samples with midi-metagenomics. [PDF]

Genome Res
Vollmers J, Correa Cassal M, Kaster AK.
europepmc   +1 more source

Community-driven updates for comprehensive long-read metagenomics and enhanced binning in nf-core/mag v5. [PDF]

Bioinformatics
Alvarez Saravia D, Rosenbaum A, Straub D, Downie J, Borry M, Fedewa G, Hübner A, Lundin D, Yepes-García J, McDonald J, Nahnsen S, Köhn L, Uribe-Paredes R, Navarrete MA, Warinner C, nf-core community, Fellows Yates JA.   +16 more
europepmc   +1 more source

Taxonomy bias in metagenome-assembled genome recovery. [PDF]

Microb Genom
Nebauer DJ, Nelson T, Romanis C, Neilan BA, Timms VJ.   +4 more
europepmc   +1 more source

Metagenome-assembled genome of <i>Oscillospiraceae</i> bacterium strain ZGZL, an anaerobic chloromethane-degrading bacterium enriched from rice paddy soil. [PDF]

Microbiol Resour Announc
Wang X, Wang H, Wang X, Zhang M, Cui Y, Liao H, Yang J, Zou Y, Jiang L, Li X, Yang Y.   +10 more
europepmc   +1 more source

DCVBin: a novel binning method for single-sample metagenomes based on DNA language model and variational autoencoder. [PDF]

Brief Bioinform
Wang J, Liu Y, Liu F, Hou T, Chen S, Liu S, Liu Y.   +6 more
europepmc   +1 more source

Metagenome-assembled genomes recovered from the gut microbiomes of simian immunodeficiency virus-infected rhesus macaques. [PDF]

Microbiol Resour Announc
Pham EQ, Gaulke CA, Eisen JA, Dandekar S.   +3 more
europepmc   +1 more source

Whole genome sequence of <i>Tsukamurella tyrosinosolvens</i> extracted from metagenome of human pleural fluid enriched in Mycobacteria Growth Indicator Tube. [PDF]

Microbiol Resour Announc
Moidu Jameela R, Kedare MM, Khan R, Dhankad N, Sinha RK, Zade A, Shah S, Chatterjee A.   +7 more
europepmc   +1 more source