Results 91 to 100 of about 30,876 (211)

Glucose-tolerant β-glucosidase retrieved from the metagenome

Frontiers in Microbiology, 2015
β-glucosidases (BGLs) hydrolyze cellooligosaccharides to glucose and play a crucial role in the enzymatic saccharification of cellulosic biomass. Despite their significance for the production of glucose, most identified BGLs are commonly inhibited by low
Taku eUchiyama, Katsuro eYaoi, Kentaro eMiyazaki, Kentaro eMiyazaki   +3 more
doaj   +1 more source

Kirkegaard2016 - Metagenomes from AD at Randers WWTP

, 2016
R formatted metagenome dataset:"Kirkegaard2016_Ran.RData" for extracting genomes from metagenomes. This dataset is based on sequencing of DNA from the anaerobic digester at Randers WWTP.
Rasmus Kirkegaard (2604133)
core   +1 more source

Global Structuring of Phylogenetic and Functional Diversity of Pelagic Fungi by Depth and Temperature

Frontiers in Marine Science, 2019
Fungal contributions to ecosystem processes are well documented for terrestrial systems yet oceans, which account for most of the Earth’s surface, have remained poorly explored with regards to organisms in this kingdom.
Sergio E. Morales, Ambarish Biswas, Gerhard J. Herndl, Federico Baltar, Federico Baltar   +4 more
doaj   +1 more source

Significantly overrepresented gene categories in the MC metagenomes, relative to those in the CT metagenomes.

, 2013
(A) General COG categories. (B) General KEGG categories. Calculations were based on relative abundance of each gene categories between the MC and CT metagenomes.
Shulei Sun (354595), Xiaozhen Mou (406526), Robert Heath (406529), Jisha Jacob (406528), Xinxin Lu (406527)   +4 more
core   +1 more source

Metagenomic discovery of microbial eukaryotes in stool microbiomes

mBio
Host-associated microbiota form complex microbial communities that are increasingly associated with host behavior and disease. While these microbes include bacterial, archaeal, viral, and eukaryotic constituents, most studies have focused on bacteria due
Audra L. Crouch, Laine Monsey, Molly Rambeau, Cameron Ramos, Joseph M. Yracheta, Matthew Z. Anderson   +5 more
doaj   +1 more source

Bacteria responsible for betalactamase genes in 16 metagenomes.

, 2012
Percent of betalactamase genes within each metagenome that are assigned to the listed taxa. For example, 60% of all betalactamase genes in kimchi are associated with Clostridia, 30% of all betalatamase genes in kimchi are associated with Bacilli, and 10%
Lisa M. Durso (122485), Daniel N. Miller (122491), Brian J. Wienhold (122499)   +2 more
core   +1 more source

Physiological and metagenomic analyses of microbial mats involved in self-purification of mine waters contaminated with heavy metals

Frontiers in Microbiology, 2016
Two microbial mats found inside two old (gold and uranium) mines in Zloty Stok and Kowary located in SW Poland seem to form a natural barrier that traps heavy metals leaking from dewatering systems.
Lukasz Drewniak, Pawel S Krawczyk, Sebastian Mielnicki, Dorota Adamska, Adam Sobczak, Leszek Lipinski, Weronika Burec-Drewniak, Aleksandra Sklodowska   +7 more
doaj   +1 more source

The landscape of bacterial contractile injection systems across large-scale metagenomes

Microbiology Spectrum
Bacterial contractile injection systems (CISs) have evolved as sophisticated mechanisms that enable bacteria to interact with and manipulate their hosts.
Shang Li, Jiacheng Wu, Qinghua Wang, Hongqian Cao, Lei Zhang   +4 more
doaj   +1 more source

Cryptic sulfur cycling in the deep biosphere of ferruginous Lake Towuti, Indonesia

Frontiers in Microbiology
Lake Towuti, Sulawesi, Indonesia is an ancient tectonic lake, exhibiting iron-rich, sulfate-poor anoxic deep waters. Temporal variations in water column stratification led to sediment accumulation under variable redox conditions.
Fátima Ruiz-Blas, Alexander Bartholomäus, Cynthia Henny, James M. Russell, Jens Kallmeyer, Jens Kallmeyer, Aurèle Vuillemin   +6 more
doaj   +1 more source

Recent advances and challenges in de novo genome assembly

Genomics Communications
De novo genome assembly has entered the telomere-to-telomere (T2T) era, driven by breakthroughs in high-quality long-read sequencing technologies (PacBio HiFi and ONT UL), and advanced assembly algorithms. This review comprehensively examines the current
Yingxue Yang, Wenjie Du, Yanchun Li, Jiawei Lei, Weihua Pan   +4 more
doaj   +1 more source