Results 101 to 110 of about 30,876 (211)

Curli Systems within Metagenomes.

, 2012
CsgF homologs were identified within 10 large metagenomes covering a diverse range of habitats, see Table 2, using the curated CsgF HMM. The hits were aligned with the CsgF homologs identified within refseq and phylogenetic trees were estimated using ...
Morten S. Dueholm (112730), Daniel Otzen (112738), Per Halkjær Nielsen (112741), Mads Albertsen (112734)   +3 more
core   +1 more source

Distinct bacterial community structures and arsenic biotransformation gene profiles in dust

Frontiers in Microbiology
IntroductionMicroorganisms, which are ubiquitous in the environment, have evolved a diverse array of arsenic biotransformation genes (ABGs). Dust harbors a wide range of microorganisms.
Yi Yin, Yu-Ting Lin, Gong-Ren Hu, Rui-Lian Yu, Xiao-Hui Sun, Yu Yan   +5 more
doaj   +1 more source

Comparative metagenomics using pan-metagenomic graphs

Abstract Identifying microbial genomic factors underlying human phenotypes is a key goal of microbiome research. Sequence graphs are a highly effective tool for genome comparisons because they enable high-resolution de novo analyses that capture and contextualize complex genomic variation.
Izaak Coleman, Natalya Mametyarova, Andrey Zaznaev, Peiwen Cai, Lisa Yu, Yoli Meydan, Aviya Litman, Ayushi Sharma, Lily He, Amanda Simkhovich, Dwayne Seeram, Heekuk Park, Yael R. Nobel, Aya Brown Kav, Itsik Pe’er, Anne-Catrin Uhlemann, Tal Korem   +16 more
openaire   +2 more sources

Phytolacca americana reshapes soil microbial social structures resulting in localised zones of microbial instability

Acta Biologica Slovenica
Invasive plant species can significantly alter soil ecosystems. Despite these broad impacts, the specific influence of Phytolacca americana on the structural stability and inter-kingdom connectivity of soil microbiomes remains poorly understood. While it
Matevž Likar, Valentina Bočaj, Tinkara Kepic   +2 more
doaj   +1 more source

MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes

, 2017
Clustered regularly interspaced short palindromic repeat (CRISPR) systems are the adaptive immune systems of bacteria and archaea against viral infection.
Abraham G. Moller, Chun Liang
core   +1 more source

MOESM6 of Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes

, 2019
Additional file 6: Figure S6.
Marta Cobo-Simón (4216756), Fernando Puente-Sánchez (6258017), Javier Tamames (23643)   +2 more
core   +1 more source

Focus on Metagenomics [PDF]

Journal of Biomolecular Techniques : JBT, 2017
Christopher E, Mason, Scott, Tighe
openaire   +2 more sources

Abundance of putative genes related to the N-cycle in metagenomes from Ushuaia Bay sediments, with respect to metagenomes from different environments.

, 2018
Metagenomic sequences were annotated through the IMG/M pipeline and identified using KEGG orthology (KO) identifiers. Abundances were retrieved as “estimated gene copies” (assembled and unassembled fractions), normalized to the total number of sequences ...
Priscila A. Calderoli (6029531), Fernando J. Espínola (6029534), Janet K. Jansson (117759), Mónica N. Gil (6029540), Hebe M. Dionisi (6029537), Mariana Lozada (46193)   +5 more
core   +1 more source

R objects storing aldex2 centered log ratio transformed values (metagenomes)

R objects storing aldex2 centered log ratio transformed values (skin metagenomes), computed from Bracken read counts.
Minghao Chia (16381536)
core   +1 more source

MetaFoldScan: a pipeline to scan metagenomes and identify structural homologs using HMM

, 2018
MetaFoldScan: a pipeline to scan metagenomes and identify structural homologs using HMM.
Loux, Valentin, Derozier, Sandra, Rama Rao, Nalini, André-Leroux, Gwenaëlle, Martin, Veronique, Chatel, Jean-Marc   +5 more
core   +2 more sources