Results 161 to 170 of about 95,247 (306)

Microbial ecological memory of recurrent drought enhances host stress tolerance through enrichment of plant‐beneficial bacteria

iMetaOmics, EarlyView.
Recurrent desiccation induced niche‐specific microbial ecological memory in the green part of Calohypnum plumiforme, marked by enrichment of plant‐beneficial bacteria, especially Methylobacterium and Sphingomonas, and functional shifts toward symbiosis and stress protection, potentially enhancing host tolerance within a “holobiont ecology memory ...
Chengguang Xing, Dandan Zhou, Dongwei Hou, Chunyi Lei, Zhiwei Liu, Jinhui Liu, Chaojian Hu, Jinye Liu, Shuzhen Huang, Yong Huo, Mingrui Zhou, Weiqiu Liu   +11 more
wiley   +1 more source

Modulation of Rumen Microbial Communities in Tropical Holstein Dairy Cows through Lemon Peel Essential Oil Supplementation: A Metagenomic Analysis

Yüzüncü Yıl Üniversitesi Tarim Bilimleri Dergisi
Lemon peel essential oil (LPEO) is a promising natural additive for modulating the rumen microbiota in dairy cattle. This study evaluated the effects of LPEO supplementation on fecal microbial diversity and composition in tropical Holstein cows, with ...
Dewi Ratih Ayu Daning, Iman Aji, Sri Rahayu, Mustofa Hilmi, Novita Dewi Kristanti   +4 more
doaj  

Majorbio Cloud: An integrated platform for single‐omics and integrated multi‐omics analysis of microbiome and metabolome

iMetaOmics, EarlyView.
Advances in sequencing and mass spectrometry have propelled life sciences into the multi‐omics era. Metabolomics and microbiomics are widely applied across various research fields, yet massive data analysis faces challenges like limited tool functionality and high technical barriers.
Jianhua Zhao, Linmeng Liu, Bing Yang, Mengxi Li, Junbiao Zhang, Jichen Han, Xiaodan Li, Yan Wang, Shaobing Du, Qianhui Han, Linna Zhang, Wenjuan Sun, Hao Gao, Yachen Dong, Huasheng Huang, Xianglin Zhang, Kegang Yu   +16 more
wiley   +1 more source

Computational Analysis of Viruses in Metagenomic Data

, 2019
Viruses have huge impact on controlling diseases and regulating many key ecosystem processes. As metagenomic data can contain many microbiomes including many viruses, by analyzing metagenomic data we can analyze many viruses at the same time.
Tithi, Saima Sultana
core  

Integrative host–microbiome modeling uncovers the implication of oral–gut translocation in advanced cirrhosis

iMeta, EarlyView.
Liver cirrhosis is associated with profound disruption of host–microbiome metabolic interactions. Using paired oral and fecal metagenomics combined with genome‐scale metabolic modeling, we investigated how microbial translocation along the oral–gut axis influences microbial metabolism at different cirrhosis severities.
Yi Jin, Frederick Clasen, Fernando Garcia‐Guevara, Sania Arif, Robert Schierwagen, Gholamreza Bidkhori, Michael Praktiknjo, Maximilian J. Brol, Frank E. Uschner, Florence A. Castelli, Nicolas Pons, Benoit Quinquis, Nathalie Galleron, Kevin Da Silva, Christophe Junot, Debbie L. Shawcross, David L. Moyes, Rajiv Jalan, S. Dusko Ehrlich, Vishal C. Patel, Jonel Trebicka, Saeed Shoaie   +21 more
wiley   +1 more source

Histological and metagenomic analysis of microbial communities in archaeological human bones. [PDF]

PLoS One
Kaptan D, Flemming Elvers AC, Kjær Knudsen A, Schroeder H, Hollund HI.   +4 more
europepmc   +1 more source

microeco 2: A comprehensive R package for downstream analysis of microbiome omics data

iMeta, EarlyView.
The current version 2.0 of the microeco package represents a substantial update compared to the previously published version. Key enhancements include the addition of new classes, integration of a broader suite of analytical methods, a comprehensive overhaul of the parameter system, improved connectivity between statistical analysis and visualization ...
Chi Liu, Xiangzhen Li, Felipe R. P. Mansoldo, Tong Chen, Fanzheng Meng, Ruixiang Tang, Siyu Zhou, Qinghua Yang, Ruixin Shao, Minjie Yao   +9 more
wiley   +1 more source

Metagenomic Analysis

Nippon Shokuhin Kagaku Kogaku Kaishi, 2011
openaire   +2 more sources

Metagenomic analysis of the DNA virome communities in swine lungs. [PDF]

Front Microbiol
Liu Z, Xiahou Y, Li J, Wu F, Fan Y, Liu R, Zhou M, Ding Z, Zhang Y, Chen C, Huang L, Ai H.   +11 more
europepmc   +1 more source

Antiviral defense systems drive persistence of antimicrobial‐resistant bacteria but limit the transfer of antimicrobial resistance genes in anaerobic digestion

iMeta, EarlyView.
Phage–host interactions critically shape environmental antimicrobial resistance (AMR). Using swine manure anaerobic digestion and multi‐omics (metagenomics, meta‐transcriptomics, and Hi‐C), we mapped the phage–bacteria arms race and its impact on AMR dynamics.
Junya Zhang, Tiedong Lu, Qihe Tang, Song‐Can Chen, Daniel Rios Garza, Bin Liu, Yunwei Cui, Yuansong Wei, Hans Hermann Richnow   +8 more
wiley   +1 more source