Results 61 to 70 of about 145,529 (249)

Metagenomic Binning Revealed Microbial Shifts in Anaerobic Degradation of Phenol with Hydrochar and Pyrochar

open access: yesFermentation, 2023
Phenolic compounds, which are difficultly degraded, are one of the main toxic threats faced in the anaerobic digestion (AD) process. It has previously been reported that hydrochar/pyrochar produced by the hydrothermal liquefaction/pyrolysis of biomass ...
Tao Luo   +6 more
doaj   +1 more source

Metagenomic-based Surveillance of Pacific Coast tick Dermacentor occidentalis Identifies Two Novel Bunyaviruses and an Emerging Human Ricksettsial Pathogen. [PDF]

open access: yes, 2017
An increasing number of emerging tick-borne diseases has been reported in the United States since the 1970s. Using metagenomic next generation sequencing, we detected nucleic acid sequences from 2 novel viruses in the family Bunyaviridae and an emerging ...
Bouquet, Jerome   +5 more
core   +2 more sources

Microbiome Analysis of Rhizosphere Soil of Wild Succulent Shrubs Zygophyllum coccineum and Haloxylon salicornicum

open access: yesAgronomy
Zygophyllum coccineum L. and Haloxylon salicornicum are dominant plant species in the natural habitats of Saudi Arabia. The soil microbiome is indispensable for nutrient cycling and stress resilience.
Abdulaziz Alharbi, Medhat Rehan
doaj   +1 more source

Metagenomic analysis fecal microbiota of dysentery-like diarrhoea in a pig farm using next-generation sequencing

open access: yesFrontiers in Veterinary Science, 2023
Porcine enteric diseases including swine dysentery involves a wide range of possible aetiologies and seriously damages the intestine of pigs of all ages.
Xi Chen   +4 more
doaj   +1 more source

Clinical metagenomics. [PDF]

open access: yes, 2019
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly moving from research to clinical laboratories. This emerging approach is changing
Chiu, Charles Y, Miller, Steven A
core  

Proteomics as the final step in the functional metagenomics study of antimicrobial resistance [PDF]

open access: yes, 2015
peer-reviewedThe majority of clinically applied antimicrobial agents are derived from natural products generated by soil microorganisms and therefore resistance is likely to be ubiquitous in such environments.
Cotter, Paul D.   +4 more
core   +1 more source

In-depth resistome analysis by targeted metagenomics [PDF]

open access: yesMicrobiome, 2017
ABSTRACTWe developed ResCap, a targeted sequence capture platform based on SeqCapEZ technology, to analyse resistomes and other genes related to antimicrobial resistance (heavy metals, biocides and plasmids). ResCap includes probes for 8,667 canonical resistance genes (7,963 antibiotic resistance genes and 704 genes conferring resistance to metals or ...
Lanza, Val F.   +13 more
openaire   +9 more sources

Comparison of metagenomic analysis of fecal and gastrointestinal tract samples for identifying beneficial gut microorganisms

open access: yesFrontiers in Microbiology
IntroductionPrevious research on the gut microbiome has primarily focused on fecal microbiota, raising concerns about whether fecal samples accurately represent the entire intestinal microbiota.
Ji-Seon Ahn   +4 more
doaj   +1 more source

Analysis of a data matrix and a graph: Metagenomic data and the phylogenetic tree [PDF]

open access: yes, 2011
In biological experiments researchers often have information in the form of a graph that supplements observed numerical data. Incorporating the knowledge contained in these graphs into an analysis of the numerical data is an important and nontrivial task.
Purdom, Elizabeth
core   +1 more source

Gut bacteria responding to dietary change encode sialidases that exhibit preference for red meat-associated carbohydrates. [PDF]

open access: yes, 2019
Dietary habits have been associated with alterations of the human gut resident microorganisms contributing to obesity, diabetes and cancer1. In Western diets, red meat is a frequently eaten food2, but long-term consumption has been associated with ...
Alisson-Silva, Frederico   +14 more
core  

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