Results 41 to 50 of about 95,247 (306)

Acclimation Time Enhances Adaptation of Heterotrophic Nitrifying-Aerobic Denitrifying Microflora to Linear Anionic Surfactant Stress

Microorganisms
Linear anionic surfactants (LAS) pose significant stress to microbial denitrification in wastewater treatment. This study investigated the performance and adaptation mechanisms of heterotrophic nitrification-aerobic denitrification (HN-AD) microbial ...
Huihui Han, Peizhen Chen, Wenjie Zhao, Shaopeng Li, Keyu Zhang   +4 more
doaj   +1 more source

Identifying the factors affecting pipelines for metagenomic analysis of yeasts in the microbiome

, 2023
Yeast is a diverse group of organisms that has wide range of applications in food industry and human health. Due to complexity of the microbiome and errors in sequencing data, metagenomic analysis can be challenging.
Kultazina, Malika
core  

Designing and implementing an assay for the detection of rare and divergent NRPS and PKS clones in European, Antarctic and Cuban soils [PDF]

, 2015
The ever increasing microbial resistome means there is an urgent need for new antibiotics. Metagenomics is an underexploited tool in the field of drug discovery. In this study we aimed to produce a new updated assay for the discovery of biosynthetic gene
David A Pearce, Gregory C A Amos, Gregory C. A. Amos (799040), Leo Calvo-Bado (507757), Berry, Andrew E., Chiara Borsetto (799041), Andrew E Berry, Laskaris, Paris, Calvo-Bado, Leo, Paris Laskaris, Carlos Vallin (5665333), Berry, Andrew, Calvo-Bado, Leo A., David A. Pearce (189743), Leo Calvo-Bado, Elizabeth M H Wellington, Chiara Borsetto, Elizabeth M. H. Wellington (325617), Borsetto, Chiara, Kevin K Newsham, Amos, Gregory, Carlos Vallin, Paris Laskaris (325613), Andrew E. Berry (799043), Martin Krsek, Wellington, Elizabeth M. H., Martin Krsek (799042), Pearce, David, Pearce, David A., Kevin K. Newsham (352778), Vallin, Carlos, Krsek, Martin, Wellington, Elizabeth, Newsham, Kevin, Wellington, E. M. H., Amos, Gregory C. A., Newsham, Kevin K.   +36 more
core   +1 more source

WebMGA: a customizable web server for fast metagenomic sequence analysis [PDF]

, 2011
Background The new field of metagenomics studies microorganism communities by culture-independent sequencing. With the advances in next-generation sequencing techniques, researchers are facing tremendous challenges in metagenomic data ...
Liming Fu, Beifang Niu, Wu, Sitao, Fu, Liming, Li, Weizhong, Sitao Wu, Weizhong Li, Zhu, Zhengwei, Zhengwei Zhu, Niu, Beifang   +9 more
core   +2 more sources

Metagenomic Sequencing From Mosquitoes in China Reveals a Variety of Insect and Human Viruses

Frontiers in Cellular and Infection Microbiology, 2018
We collected 8,700 mosquitoes in three sites in China, which belonged to seven species. Their viromes were tested using metagenomic sequencing and bioinformatic analysis.
Pengpeng Xiao, Pengpeng Xiao, Pengpeng Xiao, Chenghui Li, Chenghui Li, Ying Zhang, Jicheng Han, Jicheng Han, Xiaofang Guo, Lv Xie, Mingyao Tian, Mingyao Tian, Yiquan Li, Yiquan Li, Maopeng Wang, Hao Liu, Hao Liu, Jingqiang Ren, Jingqiang Ren, Hongning Zhou, Huijun Lu, Huijun Lu, Ningyi Jin, Ningyi Jin   +23 more
doaj   +1 more source

Combining methods for non-invasive fecal DNA enables whole genome and metagenomic analyses in wildlife biology

Frontiers in Genetics, 2023
Non-invasive biological samples benefit studies that investigate rare, elusive, endangered, or dangerous species. Integrating genomic techniques that use non-invasive biological sampling with advances in computational approaches can benefit and inform ...
Alida de Flamingh, Yasuko Ishida, Patrícia Pečnerová, Sahara Vilchis, Hans R. Siegismund, Rudi J. van Aarde, Ripan S. Malhi, Ripan S. Malhi, Alfred L. Roca, Alfred L. Roca   +9 more
doaj   +1 more source

Reconstruction of the Functional Ecosystem in the High Light, Low Temperature Union Glacier Region, Antarctica

Frontiers in Microbiology, 2019
Antarctica is covered by multiple larger glaciers with diverse extreme conditions. Microorganisms in Antarctic regions are primarily responsible for diverse biogeochemical processes.
Yi Li, Qian-Qian Cha, Yan-Ru Dang, Xiu-Lan Chen, Xiu-Lan Chen, Min Wang, Andrew McMinn, Andrew McMinn, Giannina Espina, Yu-Zhong Zhang, Yu-Zhong Zhang, Yu-Zhong Zhang, Jenny M. Blamey, Jenny M. Blamey, Qi-Long Qin   +14 more
doaj   +1 more source

Cunningham: a BLAST Runtime Estimator

, 2011
BLAST is arguably the single most important piece of software ever written for the biological sciences. It is the core of most bioinformatics workflows, being a critical component of genome homology searches and annotation.
Malcolm Matalka, James R. White, James White, Samuel V. Angiuoli, W. Florian Fricke, Samuel Angiuoli   +5 more
core   +1 more source

A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation [PDF]

, 2017
Wine is a complex beverage, comprising hundreds of metabolites produced through the action of yeasts and bacteria in fermenting grape must. To ensure a robust and reliable fermentation, most commercial wines are produced via inoculation with commercial ...
Peter R. Sternes, Sternes, Peter R., Lee, Danna,, Borneman, Anthony R.,, Borneman, A.R., Sternes, P.R., Sternes, Peter R.,, Anthony R. Borneman, Kutyna, Dariusz R.,, Danna Lee, Lee, Danna, Dariusz R. Kutyna, Kutyna, D.R., Kutyna, Dariusz R., Lee, D., Borneman, Anthony R.   +15 more
core   +1 more source

The human gut microbiome across the life course

FEBS Letters, EarlyView.
Despite significant individual variation and continuous change throughout life, the human gut microbiome follows some life stage‐specific trends. This article provides a brief overview of how gut microbiome composition shifts across different phases of life. Created in BioRender. Özkurt, E. (2026) https://BioRender.com/8q4nrnc.
Alise J. Ponsero, Basak Bahcivanci, Antonietta Hayhoe, Animesh Acharjee, Ezgi Özkurt   +4 more
wiley   +1 more source