Results 21 to 30 of about 81,015 (266)

Analysis of metagenomic data

Nature Reviews Methods Primers
Metagenomics has revolutionized our understanding of microbial communities, offering unprecedented insights into their genetic and functional diversity across Earth's diverse ecosystems. Beyond their roles as environmental constituents, microbiomes act as symbionts, profoundly influencing the health and function of their host organisms.
Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser, Francesco Andreace, Ran Blekhman, Dagmara Błaszczyk, Rayan Chikhi, Keith A. Crandall, Katja Della Libera, Dallace Francis, Alina Frolova, Abigail Shahar Gancz, Naomi E. Huntley, Pooja Jaiswal, Tomasz Kosciolek, Pawel P. Łabaj, Wojciech Łabaj, Tu Luan, Christopher Mason, Ahmed M. Moustafa, Harihara Subrahmaniam Muralidharan, Onur Mutlu, Nika Mansouri Ghiasi, Ali Rahnavard, Fengzhu Sun, Shuchang Tian, Braden T. Tierney, Emily Van Syoc, Riccardo Vicedomini, Joseph P. Zackular, Alex Zelikovsky, Kinga Zielińska, Erika Ganda, Emily R. Davenport, Mihai Pop, David Koslicki, Serghei Mangul   +39 more
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Cellulose Digestion and Metabolism Induced Biocatalytic Transitions in Anaerobic Microbial Ecosystems

Metabolites, 2013
Anaerobic digestion of highly polymerized biomass by microbial communities present in diverse microbial ecosystems is an indispensable metabolic process for biogeochemical cycling in nature and for industrial activities required to maintain a sustainable
Akira Yamazawa, Tomohiro Iikura, Yusuke Morioka, Amiu Shino, Yoshiyuki Ogata, Yasuhiro Date, Jun Kikuchi   +6 more
doaj   +1 more source

Metagenomic Analysis of Togaviridae in Mosquito Viromes Isolated From Yunnan Province in China Reveals Genes from Chikungunya and Ross River Viruses

Frontiers in Cellular and Infection Microbiology, 2022
We collected 5,500 mosquitoes belonging to six species in three locations in China. Their viromes were tested using metagenomic sequencing and bioinformatic analysis.
Guanrong Feng, Jinyong Zhang, Ying Zhang, Chenghui Li, Duo Zhang, Yiquan Li, Hongning Zhou, Nan Li, Pengpeng Xiao   +8 more
doaj   +1 more source

Short-Term Dynamics of Bacterial Community Structure in Restored Abandoned Agricultural Soils under Semi-Arid Conditions

Agronomy, 2022
The restoration of unproductive abandoned agricultural soils under a semi-arid climate in southeastern Spain was evaluated. Four organic amendments from different composted wastes (greenhouse crop residues; worm compost from sheep–cow manure and plant ...
Natalia Rodríguez-Berbel, Rocío Soria, Ana B. Villafuerte, Raúl Ortega, Isabel Miralles   +4 more
doaj   +1 more source

In-depth resistome analysis by targeted metagenomics [PDF]

Microbiome, 2017
ABSTRACT We developed ResCap, a targeted sequence capture platform based on SeqCapEZ technology, to analyse resistomes and other genes related to antimicrobial resistance (heavy metals, biocides and plasmids). ResCap includes probes for 8,667 canonical resistance genes (7,963 antibiotic resistance genes and 704 genes conferring ...
Lanza, Val F., Baquero, Fernando, Martinez, Jose Luis, Ramos-Ruíz, Ricardo, Gonzalez-Zorn, Bruno, Andremont, Antoine, Sánchez-Valenzuela, Antonio, Ehrlich, Stanislav Dusko, Kennedy, Sean, Ruppe, Etienne, van Schaik, Willem, Willems, Rob J., de La Cruz, Fernando, Coque, Teresa M.   +13 more
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The gut microbiota structure of the terrestrial isopod Porcellionides pruinosus (Isopoda: Oniscidea)

The European Zoological Journal, 2020
We used a combination of culture-dependent and independent approaches to study in depth the microbial community associated with the digestive tract of the terrestrial isopod Porcellionides pruinosus (Brandt, ).
M. Delhoumi, V. Catania, W. Zaabar, M. Tolone, P. Quatrini, M. S. Achouri   +5 more
doaj   +1 more source

Viromes of Coastal Waters of the North Caspian Sea: Initial Assessment of Diversity and Functional Potential

Diversity, 2023
In recent years, the study of marine viromes has become one of the most relevant areas of geoecology. Viruses are the most numerous, genetically diverse and pervasive biological entities on Earth, including in aquatic ecosystems.
Madina S. Alexyuk, Yurij S. Bukin, Tatyana V. Butina, Pavel G. Alexyuk, Vladimir E. Berezin, Andrey P. Bogoyavlenskiy   +5 more
doaj   +1 more source

An introduction to the analysis of shotgun metagenomic data [PDF]

Frontiers in Plant Science, 2014
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms and clarified the relationship between host-associated microbial communities and host phenotype. Shotgun metagenomic DNA sequencing is a relatively new and powerful environmental sequencing approach that provides insight into community biodiversity and function. But,
Thomas Jefferson Sharpton, Thomas Jefferson Sharpton   +1 more
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Metagenomic Analysis of Koumiss in Kazakhstan

Central Asian Journal of Global Health, 2014
Introduction. Koumiss is a low-alcohol product made from fermented mare's milk, which is popular in Kazakhstan, Russia, and other countries of Central Asia, China, and Mongolia. Natural mare's milk is fermented in symbiosis of two types of microorganisms (lactobacteria and yeast).
Samat Kozhakhmetov, Indira Tynybayeva, Dinara Baikhanova, Saule Saduakhasova, Gulnar Shakhabayeva, Аlmagul Kushugulova, Talgat Nurgozhin, Zhaxybay Zhumadilov   +7 more
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Metagenomic Analysis of the Virome of Mosquito Excreta

mSphere, 2020
When a mosquito feeds on a host, it ingests not only its blood meal but also an assortment of microorganisms that are present in the blood, thus acting as an environmental sampler. By using specific tests, it is possible to detect arthropod-borne viruses (arboviruses) like dengue and West Nile viruses in mosquito excreta.
Ana L. Ramírez, Agathe M. G. Colmant, David Warrilow, Bixing Huang, Alyssa T. Pyke, Jamie L. McMahon, Dagmar B. Meyer, Rikki M. A. Graham, Amy V. Jennison, Scott A. Ritchie, Andrew F. van den Hurk   +10 more
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