Results 21 to 30 of about 95,247 (306)

Metagenomic Analysis of Flaviviridae in Mosquito Viromes Isolated From Yunnan Province in China Reveals Genes From Dengue and Zika Viruses

Frontiers in Cellular and Infection Microbiology, 2018
More than 6,000 mosquitoes of six species from six sites were collected and tested for their virome using metagenomics sequencing and bioinformatic analysis. The identified viral sequences belonged to more than 50 viral families.
Pengpeng Xiao, Pengpeng Xiao, Jicheng Han, Jicheng Han, Ying Zhang, Chenghui Li, Chenghui Li, Xiaofang Guo, Shubo Wen, Mingyao Tian, Mingyao Tian, Yiquan Li, Yiquan Li, Maopeng Wang, Maopeng Wang, Hao Liu, Hao Liu, Jingqiang Ren, Jingqiang Ren, Hongning Zhou, Huijun Lu, Huijun Lu, Ningyi Jin, Ningyi Jin   +23 more
doaj   +1 more source

Dysbiosis in the Rhizosphere Microbiome of Standing Dead Korean Fir (Abies koreana)

Plants, 2022
The Korean fir (Abies koreana), a native coniferous tree species mainly found on Mt. Halla in Jeju, South Korea, is suffering from continuous population decline and has been declared an endangered species.
Gil Han, Mohamed Mannaa, Hyoseong Jeon, Hyejung Jung, Jin-Cheol Kim, Ae Ran Park, Young-Su Seo   +6 more
doaj   +1 more source

In-depth resistome analysis by targeted metagenomics [PDF]

Microbiome, 2017
ABSTRACT We developed ResCap, a targeted sequence capture platform based on SeqCapEZ technology, to analyse resistomes and other genes related to antimicrobial resistance (heavy metals, biocides and plasmids). ResCap includes probes for 8,667 canonical resistance genes (7,963 antibiotic resistance genes and 704 genes conferring ...
Lanza, Val F., Baquero, Fernando, Martinez, Jose Luis, Ramos-Ruíz, Ricardo, Gonzalez-Zorn, Bruno, Andremont, Antoine, Sánchez-Valenzuela, Antonio, Ehrlich, Stanislav Dusko, Kennedy, Sean, Ruppe, Etienne, van Schaik, Willem, Willems, Rob J., de La Cruz, Fernando, Coque, Teresa M.   +13 more
openaire   +9 more sources

Metagenomic data analysis flow chart.

, 2020
Metagenomic data analysis flow chart.
Lindsey M. Hattaway (8384412), Andy N. Hsueh (8384415), Maria E. Ramos-Nino (8384406), Daniel M. Fitzpatrick (8339346), Julie A. Dragon (8703630), Korin M. Eckstrom (8384409), Diana M. Stone (8339349), Sonia Cheetham (8339358), Scott Tighe (4453897)   +8 more
core   +2 more sources

Metagenomic Analysis of the Virome of Mosquito Excreta

mSphere, 2020
When a mosquito feeds on a host, it ingests not only its blood meal but also an assortment of microorganisms that are present in the blood, thus acting as an environmental sampler. By using specific tests, it is possible to detect arthropod-borne viruses (arboviruses) like dengue and West Nile viruses in mosquito excreta.
Ana L. Ramírez, Agathe M. G. Colmant, David Warrilow, Bixing Huang, Alyssa T. Pyke, Jamie L. McMahon, Dagmar B. Meyer, Rikki M. A. Graham, Amy V. Jennison, Scott A. Ritchie, Andrew F. van den Hurk   +10 more
openaire   +6 more sources

Cellulose Digestion and Metabolism Induced Biocatalytic Transitions in Anaerobic Microbial Ecosystems

Metabolites, 2013
Anaerobic digestion of highly polymerized biomass by microbial communities present in diverse microbial ecosystems is an indispensable metabolic process for biogeochemical cycling in nature and for industrial activities required to maintain a sustainable
Akira Yamazawa, Tomohiro Iikura, Yusuke Morioka, Amiu Shino, Yoshiyuki Ogata, Yasuhiro Date, Jun Kikuchi   +6 more
doaj   +1 more source

Metagenomic Analysis of Togaviridae in Mosquito Viromes Isolated From Yunnan Province in China Reveals Genes from Chikungunya and Ross River Viruses

Frontiers in Cellular and Infection Microbiology, 2022
We collected 5,500 mosquitoes belonging to six species in three locations in China. Their viromes were tested using metagenomic sequencing and bioinformatic analysis.
Guanrong Feng, Jinyong Zhang, Ying Zhang, Chenghui Li, Duo Zhang, Yiquan Li, Hongning Zhou, Nan Li, Pengpeng Xiao   +8 more
doaj   +1 more source

An iterative workflow for mining the human intestinal metaproteome [PDF]

, 2011
Background Peptide spectrum matching (PSM) is the standard method in shotgun proteomics data analysis. It relies on the availability of an accurate and complete sample proteome that is used to make interpretation of the spectra feasible.
Vos, W.M., de, Schaap, Peter, Willem M de Vos, Peter J Schaap, Boeren, S., Christian Beauvallet, Rooijers, Koos, Juste Catherine, Joël Doré, Doré Joël, Beauvallet, Christian, Been, M., de, Rooijers, K., de Been Mark, Schaap, P.J., Dore, Joel, Pilar Galan, Boeren Sjef, Beauvallet, C., Koos Rooijers, de Vos, W.M., Kolmeder, C., Schaap Peter J, Kolmeder, Carolin, Boeren, Sjef, de Vos, Willem M., de Been, Mark, Catherine Juste, Kolmeder Carolin, Galan, P., Doré, J., Rooijers Koos, Juste, C., Galan, Pilar, Mark de Been, Galan Pilar, Sjef Boeren, Beauvallet Christian, de Vos Willem M, de Vos, Willem, Juste, Catherine, Schaap, Peter J., de Been, M., Carolin Kolmeder   +43 more
core   +1 more source

Short-Term Dynamics of Bacterial Community Structure in Restored Abandoned Agricultural Soils under Semi-Arid Conditions

Agronomy, 2022
The restoration of unproductive abandoned agricultural soils under a semi-arid climate in southeastern Spain was evaluated. Four organic amendments from different composted wastes (greenhouse crop residues; worm compost from sheep–cow manure and plant ...
Natalia Rodríguez-Berbel, Rocío Soria, Ana B. Villafuerte, Raúl Ortega, Isabel Miralles   +4 more
doaj   +1 more source

An introduction to the analysis of shotgun metagenomic data [PDF]

Frontiers in Plant Science, 2014
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms and clarified the relationship between host-associated microbial communities and host phenotype. Shotgun metagenomic DNA sequencing is a relatively new and powerful environmental sequencing approach that provides insight into community biodiversity and function. But,
Thomas Jefferson Sharpton, Thomas Jefferson Sharpton   +1 more
openaire   +3 more sources