Results 11 to 20 of about 95,247 (306)

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data [PDF]

Nucleic Acids Research, 2013
Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil ...
Vaughan, Daniel, Mitchell, Alex, Field, Dawn, Gonzalez-Beltran, Alejandra, Scheremetjew, Maxim, McAnulla, Craig, Sansone, Susanna-Assunta, Sterk, Peter, Radhakrishnan, Rajesh, Hunter, Sarah, Leinonen, Rasko, Jones, Philip, Jones Philip, Denise, Hubert, Cochrane, Guy, Maslen, John, Oisel, Arnaud, Pesseat, Sebastien, Hubert, Denise, Corbett, Matthew, Fraser, Matthew, Rocca-Serra, Philippe, Hunter, Christopher, Michell, Alex, Maguire, Eamonn, Gift, Nuka, Nuka, Gift   +26 more
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Integrative Workflows for Metagenomic Analysis [PDF]

Frontiers in Cell and Developmental Biology, 2014
The rapid evolution of all sequencing technologies, described by the term Next Generation Sequencing (NGS), have revolutionized metagenomic analysis. They constitute a combination of high-throughput analytical protocols, coupled to delicate measuring ...
Fragiskos N Kolisis, Efthymios Ladoukakis, Fragiskos N. Kolisis, Efthymios eLadoukakis, Aristotle A Chatziioannou, Aristotelis A. Chatziioannou   +5 more
core   +4 more sources

Metagenomic Analysis of Silage [PDF]

Journal of Visualized Experiments, 2017
Metagenomics is defined as the direct analysis of deoxyribonucleic acid (DNA) purified from environmental samples and enables taxonomic identification of the microbial communities present within them. Two main metagenomic approaches exist; sequencing the 16S rRNA gene coding region, which exhibits sufficient variation between taxa for identification ...
Tennant, RK, Sambles, CM, Diffey, GE, Moore, KA, Love, J   +4 more
openaire   +3 more sources

Multivariate analysis of functional metagenomes [PDF]

Frontiers in Genetics, 2013
Metagenomics is a primary tool for the description of microbial and viral communities. The sheer magnitude of the data generated in each metagenome makes identifying key differences in the function and taxonomy between communities difficult to elucidate.
Elizabeth A. Dinsdale, Robert A. Edwards, Robert A. Edwards, Robert A. Edwards, Barbara eBailey, Imre eTuba, Sajia eAkhter, Katelyn eMcNair, Robert eSchmieder, Naneh eApkarian, Michelle eCreek, Eric eGuan, Mayra eHernandez, Katherine eIsaacs, Chris ePeterson, Todd eRegh, Vadim ePonomarenko   +16 more
openaire   +3 more sources

UMGAP: the Unipept MetaGenomics Analysis Pipeline [PDF]

BMC Genomics, 2021
Abstract Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-friendly biodiversity analysis tools.
Felix Van der Jeugt, Rien Maertens, Aranka Steyaert, Pieter Verschaffelt, Caroline De Tender, Peter Dawyndt, Bart Mesuere   +6 more
openaire   +4 more sources

MEGAN analysis of metagenomic data [PDF]

Genome Research, 2007
Metagenomics is the study of the genomic content of a sample of organisms obtained from a common habitat using targeted or random sequencing. Goals include understanding the extent and role of microbial diversity. The taxonomical content of such a sample is usually estimated by comparison against sequence databases of known sequences.
Daniel H, Huson, Alexander F, Auch, Ji, Qi, Stephan C, Schuster   +3 more
openaire   +2 more sources

A metagenomics analysis of rumen microbiome [PDF]

2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2017
Climate change and food security are significant global challenges facing society. The dairy industry is inextricably linked to these challenges as it is concerned with the economies of food production, while acknowledging that it is a major contributor to greenhouse gas production.
Paul Walsh, Cintia C. Palu, Brian Kelly, Brendan Lawlor, Jyotsna Talreja Wassan, Huiru Zheng, Haiying Wang 0001   +6 more
openaire   +1 more source

Challenges in the analysis of viral metagenomes [PDF]

Virus Evolution, 2016
Genome sequencing technologies continue to develop with remarkable pace, yet analytical approaches for reconstructing and classifying viral genomes from mixed samples remain limited in their performance and usability. Existing solutions generally target expert users and often have unclear scope, making it challenging to critically evaluate their ...
Rose, R, Constantinides, B, Tapinos, A, Robertson, D, Prosperi, M   +4 more
openaire   +3 more sources

Metagenomic analysis of a a southern maritime Antarctic soil [PDF]

, 2012
Our current understanding of Antarctic soils is derived from direct culture on selective media, biodiversity studies based on clone library construction and analysis, quantitative PCR amplification of specific gene sequences and the application of ...
David Anthony Pearce, Thorne, Michael A. S., Wellington, E. M., Andy Hodson, Kevin eNewsham, Michael A. S. Thorne, Calvo-Bado, Leo, Laskaris, Paris, Paris Laskaris, Calvo-Bado, Leo A., Hodson, A., Leo Calvo-Bado, Pearce, D. A., Elizabeth M H Wellington, Wellington, Elizabeth M., Thorne, Michael A.S., Thorne, Michael, Leo eCalvo-Bado, Paris eLaskaris, Calvo-Bado, L., Martin Krsek, Andy Hodson, Kevin K. Newsham, Thorne, M. A. S., Elizabeth M. Wellington, Laskaris, P., Pearce, David, Hodson, Andrew J., Martin eKrsek, Pearce, David A., David A. Pearce, Michael eThorne, Andy eHodson, Newsham, K. K., Krsek, M., Krsek, Martin, Wellington, Elizabeth, David A. Pearce, Newsham, Kevin, Wellington, E. M. H., Newsham, Kevin K., Hodson, Andy   +41 more
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A new method for extracting skin microbes allows metagenomic analysis of whole-deep skin [PDF]

, 2013
In the last decade, an extensive effort has been made to characterize the human microbiota, due to its clinical and economic interests. However, a metagenomic approach to the skin microbiota is hampered by the high proportion of host DNA that is ...
Francesc Calafell, Koldo Garcia-Etxebarria, Garcia-Etxebarria, Koldo, Marc Garcia-Garcerà (3214074), Mireia Coscollà (149823), Calafell, Francesc, Amparo Latorre (88013), Calafell, Francesca, Garcia-Garcerà, Marc, Koldo Garcia-Etxebarria (461325), Coscollà, Mireia, Marc Garcia-Garcerà, Amparo Latorre, Francesc Calafell (148375), Latorre, Amparo, Mireia Coscollà   +15 more
core   +1 more source