Results 11 to 20 of about 81,015 (266)

Metagenomic Analysis of Silage [PDF]

Journal of Visualized Experiments, 2017
Metagenomics is defined as the direct analysis of deoxyribonucleic acid (DNA) purified from environmental samples and enables taxonomic identification of the microbial communities present within them. Two main metagenomic approaches exist; sequencing the 16S rRNA gene coding region, which exhibits sufficient variation between taxa for identification ...
Tennant, RK, Sambles, CM, Diffey, GE, Moore, KA, Love, J   +4 more
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Multivariate analysis of functional metagenomes [PDF]

Frontiers in Genetics, 2013
Metagenomics is a primary tool for the description of microbial and viral communities. The sheer magnitude of the data generated in each metagenome makes identifying key differences in the function and taxonomy between communities difficult to elucidate.
Elizabeth A. Dinsdale, Robert A. Edwards, Robert A. Edwards, Robert A. Edwards, Barbara eBailey, Imre eTuba, Sajia eAkhter, Katelyn eMcNair, Robert eSchmieder, Naneh eApkarian, Michelle eCreek, Eric eGuan, Mayra eHernandez, Katherine eIsaacs, Chris ePeterson, Todd eRegh, Vadim ePonomarenko   +16 more
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Integrative workflows for metagenomic analysis [PDF]

Frontiers in Cell and Developmental Biology, 2014
The rapid evolution of all sequencing technologies, described by the term Next Generation Sequencing (NGS), have revolutionized metagenomic analysis. They constitute a combination of high-throughput analytical protocols, coupled to delicate measuring techniques, in order to potentially discover, properly assemble and map allelic sequences to the ...
Efthymios Ladoukakis, Fragiskos N. Kolisis, Aristotelis A. Chatziioannou   +2 more
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UMGAP: the Unipept MetaGenomics Analysis Pipeline [PDF]

BMC Genomics, 2021
Abstract Background Shotgun metagenomics yields ever richer and larger data volumes on the complex communities living in diverse environments. Extracting deep insights from the raw reads heavily depends on the availability of fast, accurate and user-friendly biodiversity analysis tools.
Felix Van der Jeugt, Rien Maertens, Aranka Steyaert, Pieter Verschaffelt, Caroline De Tender, Peter Dawyndt, Bart Mesuere   +6 more
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EBI metagenomics—a new resource for the analysis and archiving of metagenomic data [PDF]

Nucleic Acids Research, 2013
Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil, tundra, plants and body sites).
Sarah Hunter, Matthew Corbett, Hubert Denise, Matthew Fraser, Alejandra N. González-Beltrán, Christopher I. Hunter, Philip Jones, Rasko Leinonen, Craig McAnulla, Eamonn Maguire, John Maslen, Alex L. Mitchell, Gift Nuka, Arnaud Oisel, Sebastien Pesseat, Rajesh Radhakrishnan, Philippe Rocca-Serra, Maxim Scheremetjew, Peter Sterk, Daniel Vaughan, Guy Cochrane, Dawn Field, Susanna-Assunta Sansone   +22 more
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MEGAN analysis of metagenomic data [PDF]

Genome Research, 2007
Metagenomics is the study of the genomic content of a sample of organisms obtained from a common habitat using targeted or random sequencing. Goals include understanding the extent and role of microbial diversity. The taxonomical content of such a sample is usually estimated by comparison against sequence databases of known sequences.
Daniel H, Huson, Alexander F, Auch, Ji, Qi, Stephan C, Schuster   +3 more
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A metagenomics analysis of rumen microbiome [PDF]

2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2017
Climate change and food security are significant global challenges facing society. The dairy industry is inextricably linked to these challenges as it is concerned with the economies of food production, while acknowledging that it is a major contributor to greenhouse gas production.
Paul Walsh, Cintia C. Palu, Brian Kelly, Brendan Lawlor, Jyotsna Talreja Wassan, Huiru Zheng, Haiying Wang 0001   +6 more
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Challenges in the analysis of viral metagenomes [PDF]

Virus Evolution, 2016
Genome sequencing technologies continue to develop with remarkable pace, yet analytical approaches for reconstructing and classifying viral genomes from mixed samples remain limited in their performance and usability. Existing solutions generally target expert users and often have unclear scope, making it challenging to critically evaluate their ...
Rose, R, Constantinides, B, Tapinos, A, Robertson, D, Prosperi, M   +4 more
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Metagenomic Analysis of Flaviviridae in Mosquito Viromes Isolated From Yunnan Province in China Reveals Genes From Dengue and Zika Viruses

Frontiers in Cellular and Infection Microbiology, 2018
More than 6,000 mosquitoes of six species from six sites were collected and tested for their virome using metagenomics sequencing and bioinformatic analysis. The identified viral sequences belonged to more than 50 viral families.
Pengpeng Xiao, Pengpeng Xiao, Jicheng Han, Jicheng Han, Ying Zhang, Chenghui Li, Chenghui Li, Xiaofang Guo, Shubo Wen, Mingyao Tian, Mingyao Tian, Yiquan Li, Yiquan Li, Maopeng Wang, Maopeng Wang, Hao Liu, Hao Liu, Jingqiang Ren, Jingqiang Ren, Hongning Zhou, Huijun Lu, Huijun Lu, Ningyi Jin, Ningyi Jin   +23 more
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Dysbiosis in the Rhizosphere Microbiome of Standing Dead Korean Fir (Abies koreana)

Plants, 2022
The Korean fir (Abies koreana), a native coniferous tree species mainly found on Mt. Halla in Jeju, South Korea, is suffering from continuous population decline and has been declared an endangered species.
Gil Han, Mohamed Mannaa, Hyoseong Jeon, Hyejung Jung, Jin-Cheol Kim, Ae Ran Park, Young-Su Seo   +6 more
doaj   +1 more source