Results 31 to 40 of about 95,247 (306)

The gut microbiota structure of the terrestrial isopod Porcellionides pruinosus (Isopoda: Oniscidea)

The European Zoological Journal, 2020
We used a combination of culture-dependent and independent approaches to study in depth the microbial community associated with the digestive tract of the terrestrial isopod Porcellionides pruinosus (Brandt, ).
M. Delhoumi, V. Catania, W. Zaabar, M. Tolone, P. Quatrini, M. S. Achouri   +5 more
doaj   +1 more source

Viromes of Coastal Waters of the North Caspian Sea: Initial Assessment of Diversity and Functional Potential

Diversity, 2023
In recent years, the study of marine viromes has become one of the most relevant areas of geoecology. Viruses are the most numerous, genetically diverse and pervasive biological entities on Earth, including in aquatic ecosystems.
Madina S. Alexyuk, Yurij S. Bukin, Tatyana V. Butina, Pavel G. Alexyuk, Vladimir E. Berezin, Andrey P. Bogoyavlenskiy   +5 more
doaj   +1 more source

Metagenomic Analysis of the Saliva Microbiome with Merlin [PDF]

, 2014
In recent years, metagenomics has demonstrated to play an essential role on the study of the microorganisms that live in microbial communities, particularly those who inhabit the human body. Several bioinformatics tools and pipelines have been developed for the analysis of these data, but they usually only address one topic: to identify the taxonomic ...
Pedro Barbosa, Oscar Dias, Joel P. Arrais, Miguel Rocha 0001   +3 more
openaire   +2 more sources

Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes [PDF]

, 2014
The environment harbours a significant diversity of uncultured bacteria and a potential source of novel and extant resistance genes which may recombine with clinically important bacteria disseminated into environmental reservoirs.
Hawkey, PM, Zhang, Lihong, Wellington, E M, Wellington, EM, Gaze, W.H., Gaze, WH, Amos, G C A, Gaze, William H., Hawkey, Peter, Hawkey, P. M., Amos, GCA, Wellington, E.M., Hawkey, P.M., Hawkey, P M, Amos, G.C.A., Zhang, L., Zhang, L, Wellington, E. M. H., Amos, Gregory C. A., Gaze, W H   +19 more
core   +1 more source

Analysis of metagenomic data

Nature Reviews Methods Primers
Metagenomics has revolutionized our understanding of microbial communities, offering unprecedented insights into their genetic and functional diversity across Earth's diverse ecosystems. Beyond their roles as environmental constituents, microbiomes act as symbionts, profoundly influencing the health and function of their host organisms.
Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser, Francesco Andreace, Ran Blekhman, Dagmara Błaszczyk, Rayan Chikhi, Keith A. Crandall, Katja Della Libera, Dallace Francis, Alina Frolova, Abigail Shahar Gancz, Naomi E. Huntley, Pooja Jaiswal, Tomasz Kosciolek, Pawel P. Łabaj, Wojciech Łabaj, Tu Luan, Christopher Mason, Ahmed M. Moustafa, Harihara Subrahmaniam Muralidharan, Onur Mutlu, Nika Mansouri Ghiasi, Ali Rahnavard, Fengzhu Sun, Shuchang Tian, Braden T. Tierney, Emily Van Syoc, Riccardo Vicedomini, Joseph P. Zackular, Alex Zelikovsky, Kinga Zielińska, Erika Ganda, Emily R. Davenport, Mihai Pop, David Koslicki, Serghei Mangul   +39 more
openaire   +4 more sources

Metagenomic Analysis of Koumiss in Kazakhstan

Central Asian Journal of Global Health, 2014
Introduction. Koumiss is a low-alcohol product made from fermented mare's milk, which is popular in Kazakhstan, Russia, and other countries of Central Asia, China, and Mongolia. Natural mare's milk is fermented in symbiosis of two types of microorganisms (lactobacteria and yeast).
Samat Kozhakhmetov, Indira Tynybayeva, Dinara Baikhanova, Saule Saduakhasova, Gulnar Shakhabayeva, Аlmagul Kushugulova, Talgat Nurgozhin, Zhaxybay Zhumadilov   +7 more
openaire   +4 more sources

Read classifications from metagenomic analysis of grains.

, 2022
Read classifications from metagenomic analysis of grains.
Emmanuel Edwar Siddig (6755735), Emily Norris (4720908), Karlyn D. Beer (3248112), Ahmed Fahal (386197), Dhwani Batra (3605900), Ujwal R. Bagal (14047065), Nancy A. Chow (3907564), Najwa Adam Mhmoud (7326275), Darlene D. Wagner (14047062), Lavanya Rishishwar (146573), Sahar Bakhiet (11831782), Anastasia P. Litvintseva (8955608), Lalitha Gade (116996)   +12 more
core   +1 more source

Statistical Analysis of Metagenomics Data [PDF]

Genomics & Informatics, 2019
Understanding the role of the microbiome in human health and how it can be modulated is becoming increasingly relevant for preventive medicine and for the medical management of chronic diseases. The development of high-throughput sequencing technologies has boosted microbiome research through the study of microbial genomes and allowing a more precise ...
openaire   +3 more sources

A FRAMEWORK FOR ANALYSIS OF METAGENOMIC SEQUENCING DATA [PDF]

, 2010
The human body is home to a diverse assemblage of microbial species. In fact, the number of microbial cells in each person is an order of magnitude greater than the number of cells that make up the body itself. Changes in the composition and relative abundance of these microbial species are highly associated with intestinal and respiratory disorders ...
A. Murat Eren, Michael J. Ferris, Christopher M. Taylor   +2 more
openaire   +2 more sources

Taxonomic classification of metagenomic shotgun sequences with CARMA3.

, 2011
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 2011;39(14):e91.The vast majority of microbes are unculturable and thus cannot be sequenced by means of traditional methods.
Jens Stoye, Wolfgang Gerlach, Gerlach, Wolfgang, Stoye, Jens ; https://orcid.org/   +3 more
core   +1 more source