Results 101 to 110 of about 82,780 (305)

Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges

Advanced Science, EarlyView.
Confirming and extending a previous observation in another Bubarida sponge, genomic and functional analyses of A. cavernosa reveal that sponges retain the mevalonate pathway and employ single α‐domain T1TSs and UbiA‐type TSs for terpenoid biosynthesis. The absence of T1TSs clustering with other biosynthetic genes tentatively suggests, based on limited ...
Fangyan Chen, Bao Chen, Wenhui Zhang, Guifang Sun, Yao Zhao, Jianpeng Zhang, Baofu Xu   +6 more
wiley   +1 more source

Emerging Clostridioides difficile ribotypes have divergent metabolic phenotypes

mSystems
Clostridioides difficile is a gram-positive spore-forming pathogen that commonly causes diarrheal infections in the developed world. Although C. difficile is a genetically diverse species, certain ribotypes are overrepresented in human infections, and it
Firas S. Midani, Heather A. Danhof, Nathanael Mathew, Colleen K. Ardis, Kevin W. Garey, Jennifer K. Spinler, Robert A. Britton   +6 more
doaj   +1 more source

AstrobioMike/bit: Metagenomics-wf-v1.0.0

<ul> <li>1.0.0 release of metagenomics workflow</li> </ul ...
John Sterrett, Mike Lee
core   +1 more source

Programming Gut Microbiome Function Through Cross‐Feeding: From Ecological Mechanisms to Live Biotherapeutics

Advanced Science, EarlyView.
This graphical abstract presents gut microbial cross‐feeding through a Mechanism–Technology–Application framework. It summarizes major resource‐transfer modes, the experimental and computational tools used to establish causality, and potential interventions involving dietary substrates, live biotherapeutic products, and engineered microbes.
Chuankai Sun, Teng Ma, Hao Jin, Zelong Li, Yi Cheng, Jingjin Li, Lai‐Yu Kwok, Zhihong Sun   +7 more
wiley   +1 more source

carpentries-lab/metagenomics-workshop: First Versio

Metagenomics Workshop ...
Claudia, Zirión Martínez, Edder Daniel, Díaz, Luis Gerardo, Tejero, Diego, Garfias Gallegos, Tania Vanessa, Arellano Fernandez, Nelly, Selem Mojica, Jesús Abraham, Avelar Rivas, José Abel, Lovaco Flores, Aaron, Espinosa Jaime   +8 more
core   +1 more source

Gut Microbiota‐Isoallolithocholic Acid Crosstalk Promotes Calcium Oxalate Kidney Stone Formation via PARP1‐Mediated Parthanatos

Advanced Science, EarlyView.
ABSTRACT Bile acids have been implicated in calcium oxalate (CaOx) nephrolithiasis. Here, we employ multi‐omics approaches to identify isoallolithocholic acid (isoalloLCA) as the key bile acid elevated in the feces, serum, kidney, and urine of CaOx rats, confirmed by spatial metabolomics.
Zijian Zhou, Ruixi Yu, Xuan Zhou, Feng Shi, Zeyu Lin, Peng Gao, Lujia Wang, Ninghan Feng, Zhong Wu, Dawei Wang   +9 more
wiley   +1 more source

The effect of short-term consumption of Bifidobacterium bifidum on the gut microbiome of obese individuals

Experimental Biology and Medicine
It is known that gut microbiota dysbiosis can lead to obesity by disrupting energy consumption and metabolism. Probiotic supplements are a potential therapeutic option for improving intestinal homeostasis.
Inna Burakova, Yuliya Smirnova, Polina Morozova, Svetlana Pogorelova, Olga Kryukova, Tatiana Kislova, Olga Korneeva, Mikhail Syromyatnikov   +7 more
doaj   +1 more source

Seeing the forest for the genes: using metagenomics to infer the aggregated traits of microbial communities [PDF]

, 2014
Most environments harbor large numbers of microbial taxa with ecologies that remain poorly described and characterizing the functional capabilities of whole communities remains a key challenge in microbial ecology.
Daniel eLaughlin, Fierer, Noah, Laughlin, Daniel C., Noah Fierer, Noah eFierer, Albert eBarberan, Daniel C. Laughlin, Barberán, Albert, Albert Barberán   +8 more
core   +1 more source

Harnessing Large Language Models to Advance Microbiome Research: From Sequence Analysis to Clinical Applications

Advanced Intelligent Discovery, EarlyView.
Large language models are transforming microbiome research by enabling advanced sequence profiling, functional prediction, and association mining across complex datasets. They automate microbial classification and disease‐state recognition, improving cross‐study integration and clinical diagnostics.
Jieqi Xing, He Wang, Yangyang Sun, Xiaoquan Su, Shunyao Wu   +4 more
wiley   +1 more source

Metagenomic re-analysis of coprolites from pre-Columbian cultures from Puerto Rico

, 2023
Analysis of metagenomics data from pre-Columbian culture of Huecoid and Saladoid. Mapped the ancient cultures with around 50 yeast species. Used different bioinformatic tools to analyse data.
Bansod, Kshitij
core