Results 211 to 220 of about 72,279 (314)

The Gut Microbiome Obesity Index: A New Analytical Tool in the Metagenomics Workflow for the Evaluation of Gut Dysbiosis in Obese Humans. [PDF]

Nutrients
Kulecka M, Jaworski P, Zeber-Lubecka N, Bałabas A, Piątkowska M, Czarnowski P, Frączek B, Tarnowski W, Mikula M, Ostrowski J.   +9 more
europepmc   +1 more source

Introductory Chapter: Metagenomics and Metagenomic Approaches

, 2020
openaire   +4 more sources

Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs, Model Ranking, and Deep Learning

Proteins: Structure, Function, and Bioinformatics, EarlyView.
ABSTRACT We present the methods and results of our protein complex and RNA structure predictions at CASP16. Our approach integrated multiple state‐of‐the‐art deep learning models with a consensus‐based scoring method. To enhance the depth of multiple sequence alignments (MSAs), we employed a large metagenomic sequence database.
Yuki Kagaya, Tsukasa Nakamura, Jacob Verburgt, Anika Jain, Genki Terashi, Pranav Punuru, Emilia Tugolukova, Joon Hong Park, Anouka Saha, David Huang, Daisuke Kihara   +10 more
wiley   +1 more source

A systematic benchmark of integrative strategies for microbiome-metabolome data. [PDF]

Commun Biol
Mangnier L, Bodein A, Mariaz M, Mathieu A, Scott-Boyer MP, Vashist N, Bramble MS, Droit A.   +7 more
europepmc   +1 more source

Highlights of Model Quality Assessment in CASP16

Proteins: Structure, Function, and Bioinformatics, EarlyView.
ABSTRACT Model quality assessment (MQA) remains a critical component of structural bioinformatics for both structure predictors and experimentalists seeking to use predictions for downstream applications. In CASP16, the Evaluation of Model Accuracy (EMA) category featured both global and local quality estimation for multimeric assemblies (QMODE1 and ...
Alisia Fadini, Recep Adiyaman, Shaima N. Alhaddad, Behnosh Behzadi, Jianlin Cheng, Xinyue Cui, Nicholas S. Edmunds, Lydia Freddolino, Ahmet G. Genc, Fang Liang, Dong Liu, Jian Liu, Quancheng Liu, Liam J. McGuffin, Pawan Neupane, Chunxiang Peng, David R. Shortle, Meng Sun, Haodong Wang, Qiqige Wuyun, Guijun Zhang, Xuanfeng Zhao, Wei Zheng, Randy J. Read   +23 more
wiley   +1 more source

Bioinformatics Research in Bacterial Genomics and Metagenomics. [PDF]

Curr Issues Mol Biol
Baev V.
europepmc   +1 more source

Faecalibacterium Diversity in the Gut Microbiome of Crohn's Disease Patients

United European Gastroenterology Journal, EarlyView.
ABSTRACT Faecalibacterium has recently garnered attention for its potential health implications. To better understand its role, we developed and assessed real‐time PCR assays for detecting and quantifying various Faecalibacterium species in human stool samples from both healthy individuals and Crohn's disease patients, either in flare or remission. The
Paul Mclellan, Sandrine Auger, Marie Therese Goudiaby, Loic Brot, Nicolas Benech, Jean Pierre Grill, Anne Bourrier, Denis Mariat, Camille Mayeur, Muriel Thomas, Véronique Robert, Julien Kirchgesner, Laurent Beaugerie, Harry Sokol, Philippe Langella, Philippe Seksik, Jean Marc Chatel   +16 more
wiley   +1 more source

Metagenomics reveals contrasted responses of microbial communities to wheat straw amendment in cropland and grassland soils. [PDF]

Sci Rep
Jarrige D, Tardy V, Loux V, Rué O, Chabbi A, Terrat S, Maron PA.   +6 more
europepmc   +1 more source

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

, 2009
Yong Wang, Pei‐Yuan Qian
openalex   +2 more sources

Dissecting Microscopic Colitis Immunopathophysiology: Insights From Basic Research

United European Gastroenterology Journal, EarlyView.
ABSTRACT Microscopic colitis is an inflammatory bowel disease (IBD) comprising two clinically undiscernible entities: collagenous colitis and lymphocytic colitis. Collagenous colitis associates with HLA genes and displays a Th1/Tc1–Th17/Tc17 profile with pericryptal myofibroblast activity, water malabsorption and secondary fluid loss due to altered ...
Andreas Münch, Celia Escudero‐Hernández   +1 more
wiley   +1 more source