Results 41 to 50 of about 162,178 (247)
Mitochondrial metagenomics: letting the genes out of the bottle [PDF]
, 2016 ‘Mitochondrial metagenomics’ (MMG) is a methodology for shotgun sequencing of total DNA from specimen mixtures and subsequent bioinformatic extraction of mitochondrial sequences.
Crampton-Platt, Alex +3 more
core +1 more source
Back to the future of soil metagenomics [PDF]
, 2016 JN was funded by a fellowship from the French MENESR.Peer reviewedPeer ...
Alexander eSczyrba +49 more
core +9 more sources
BMC Genomics, 2021 Background 16S rRNA gene amplicon sequencing (16S analysis) is widely used to analyze microbiota with next-generation sequencing technologies. Here, we compared fecal 16S analysis data from 192 Japanese volunteers using the modified V1–V2 (V12) and the ...
Shoichiro Kameoka +9 more
doaj +1 more source
Microorganisms, 2021 Recent years have seen the classification and reclassification of many viruses related to the model enterobacterial phage P2. Here, we report the identification of a prophage (Smhb1) that infects Salinivibrio kushneri BNH isolated from a Namib Desert ...
Israel Olonade +2 more
doaj +1 more source
Molecular Phenomics and Metagenomics of Hepatic Steatosis in Non-Diabetic Obese Women
Nature Network Boston, 2018 Hepatic steatosis is a multifactorial condition that is often observed in obese patients and is a prelude to non-alcoholic fatty liver disease. Here, we combine shotgun sequencing of fecal metagenomes with molecular phenomics (hepatic transcriptome and ...
L. Hoyles +34 more
semanticscholar +1 more source
Microbiome, 2021 Obtaining high-quality (HQ) reference genomes from microbial communities is crucial for understanding the phylogeny and function of uncultured microbes in complex microbial ecosystems.
Koji Arikawa +8 more
semanticscholar +1 more source
Methodology and ontology in microbiome research [PDF]
, 2014 Research on the human microbiome has gen- erated a staggering amount of sequence data, revealing variation in microbial diversity at the community, species (or phylotype), and genomic levels. In order to make this complexity more manageable and easier to
Huss, John
core +1 more source
Metagenomics Approaches for Improving Food Safety.
Journal of Food Protection, 2021 Advancements in next-generation sequencing technology have dramatically reduced the cost and increased the ease of microbial whole-genome sequencing. This is revolutionizing the identification and analysis of foodborne microbial pathogens, facilitating ...
C. Billington, J. Kingsbury, L. Rivas
semanticscholar +1 more source
Dirichlet multinomial mixtures: generative models for microbial metagenomics [PDF]
, 2012 We introduce Dirichlet multinomial mixtures (DMM) for the probabilistic modelling of microbial metagenomics data. This data can be represented as a frequency matrix giving the number of times each taxa is observed in each sample.
Harris, Keith +2 more
core +4 more sources
Investigating Colonization of the Healthy Adult Gastrointestinal Tract by Fungi
mSphere, 2018 A wide diversity of fungi have been detected in the human gastrointestinal (GI) tract with the potential to provide or influence important functions. However, many of the fungi most commonly detected in stool samples are also present in food or the oral ...
Thomas A. Auchtung +8 more
doaj +1 more source