Results 41 to 50 of about 107,555 (273)
Maximal viral information recovery from sequence data using VirMAP
Nature Communications, 2018 Viral taxonomic characterization from metagenomic data suffers from high background noise and signal crosstalk. Here, the authors develop VirMAP, a novel pipeline for analyses of metagenomic data that classifies viral reconstructions independent of ...
Nadim J Ajami +4 more
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Frontiers in Microbiology, 2016 Plant growth promoting rhizobacteria produce chemical compounds with different benefits for the plant. Among them, HCN is recognized as a biocontrol agent, based on its ascribed toxicity against plant pathogens.
Tomaž Rijavec +4 more
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Metagenome2Vec: Building Contextualized Representations for Scalable Metagenome Analysis [PDF]
arXiv, 2021 Advances in next-generation metagenome sequencing have the potential to revolutionize the point-of-care diagnosis of novel pathogen infections, which could help prevent potential widespread transmission of diseases. Given the high volume of metagenome sequences, there is a need for scalable frameworks to analyze and segment metagenome sequences from ...
arxiv
Metagenome of a polluted river reveals a reservoir of metabolic and antibiotic resistance genes
Environmental Microbiome, 2019 Background Yamuna, a major tributary of Ganga, which flows through the national capital region of Delhi, is among the major polluted rivers in India. The accumulation of various effluents, toxic chemicals, heavy metals, and increased organic load in the ...
Parul Mittal +4 more
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NLP-based classification of software tools for metagenomics sequencing data analysis into EDAM semantic annotation [PDF]
arXiv, 2022 Motivation: The rapid growth of metagenomics sequencing data makes metagenomics increasingly dependent on computational and statistical methods for fast and efficient analysis. Consequently, novel analysis tools for big-data metagenomics are constantly emerging.
arxiv
Pattern-Recognition Receptors and Cervical Microbiome in Patients with Early Miscarriages
International Journal of InflammationEarly miscarriages are one of the main causes of reproductive losses. The objective of this study was to estimate Toll- and NOD-like receptors mRNA expression levels and their correlation with microbiome composition in the endocervix of patients with 1st
Mariya V. Gryaznova +9 more
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The gut mycobiome of the Human Microbiome Project healthy cohort
Microbiome, 2017 Background Most studies describing the human gut microbiome in healthy and diseased states have emphasized the bacterial component, but the fungal microbiome (i.e., the mycobiome) is beginning to gain recognition as a fundamental part of our microbiome ...
Andrea K. Nash +11 more
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Mitochondrial metagenomics: letting the genes out of the bottle [PDF]
, 2016 ‘Mitochondrial metagenomics’ (MMG) is a methodology for shotgun sequencing of total DNA from specimen mixtures and subsequent bioinformatic extraction of mitochondrial sequences.
Crampton-Platt, Alex +3 more
core +1 more source
Life, 2013 Hot springs have been investigated since the XIX century, but isolation and examination of their thermophilic microbial inhabitants did not start until the 1950s. Many thermophilic microorganisms and their viruses have since been discovered, although the real complexity of thermal communities was envisaged when research based on PCR amplification of ...
Olalla López-López +2 more
openaire +4 more sources
BMC GenomicsBackground Parameters adversely affecting the contiguity and accuracy of the assemblies from Illumina next-generation sequencing (NGS) are well described.
Zoltán Rádai +7 more
doaj +1 more source