Results 171 to 180 of about 5,355 (193)

Metaproteomic analysis using the Galaxy framework

PROTEOMICS, 2015
Metaproteomics characterizes proteins expressed by microorganism communities (microbiome) present in environmental samples or a host organism (e.g. human), revealing insights into the molecular functions conferred by these communities. Compared to conventional proteomics, metaproteomics presents unique data analysis challenges, including the use of ...
Pratik D, Jagtap, Alan, Blakely, Kevin, Murray, Shaun, Stewart, Joel, Kooren, James E, Johnson, Nelson L, Rhodus, Joel, Rudney, Timothy J, Griffin   +8 more
openaire   +2 more sources

Metaproteomics: Sample Preparation and Methodological Considerations

2019
Meta-omic techniques have progressed rapidly in the past decade and are frequently used in microbial ecology to study microorganisms in their natural ecosystems independent from culture restrictions. Metaproteomics, in combination with metagenomics, enables quantitative assessment of expressed proteins and pathways from individual members of the ...
Kunath, Benoit J., Minniti, Giusi, Skaugen, Morten, Hagen, Live H., Vaaje-Kolstad, Gustav, Eijsink, Vincent G.H., Pope, Phil B., Arntzen, Magnus   +7 more
openaire   +3 more sources

[Strategy and application of metaproteomics].

Sheng wu gong cheng xue bao = Chinese journal of biotechnology, 2011
Metaproteomics is an emerging proteomics technology to analyze large scale protein expression in environmental microbial ecosystem. It is termed as the large-scale characterization of the entire protein complement of environmental microbial community at a given point in time. This review focuses on the research strategies and the recent applications in
Rentao, Yu, Peiji, Gao, Li, Han, Liuyu, Huang   +3 more
openaire   +1 more source

Beginners Guide for Metaproteomics

MS files The repository contains converted MGF files for eight human faecal metaproteomic samples originally published by Thuy-Boun et al. [1]. Sample Condition Original RAW file Included MGF file H1 Healthy control H1.raw H1.mgf H2 Healthy control H2.raw H2.mgf H3 Healthy control H3.raw H3.mgf H5 Healthy control H5.raw H5.mgf UC1 ...
Kautzner, Daniel, Schütte, Maximilian, Eggers, Britta, Marcus, Katrin, Heyer, Robert   +4 more
openaire   +1 more source

Environmental Metaproteomics

2022
Hiren K. Patel, D. Priyanka, P. P. Sheladiya, Rishee K. Kalaria   +3 more
openaire   +1 more source

Metaproteomics in Nutrition

2021
Simon Deusch, Jana Seifert
openaire   +1 more source

Database-independent de novo metaproteomics of complex microbial communities

Cell Systems, 2021
Hugobert Bernhard Crijn Kleikamp, Martin Pabst, Mario Pronk   +2 more
exaly  

Metaproteomics insights into traditional fermented foods and beverages

Comprehensive Reviews in Food Science and Food Safety, 2020
Wenlai Fan, Liang Yang, Yan Xu
exaly  

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Gut Microbes, 2022
Krystal L A Walker, Janice Mayne, Xu Zhang   +2 more
exaly  

Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota—Implementation and Computational Analysis

Journal of Proteome Research, 2020
Laura Elo, Mehrad Mahmoudian, Petri Kouvonen   +2 more
exaly