Results 181 to 190 of about 7,727 (208)

Vitamin B₁₂-associated interactions between <i>Mesorhizobium</i> sp. TaiHu and <i>Synechococcus</i> sp. PCC 7002 revealed by multi-omics analysis. [PDF]

Microb Genom
Liu G, Bai P, Ren M, Li Q, Li T.
europepmc   +1 more source

Multi-omics reveals nitrogen dynamics associated with soil microbial blooms during snowmelt. [PDF]

Nat Microbiol
Sorensen PO, Karaoz U, Beller HR, Bill M, Bouskill NJ, Banfied JF, Chu RK, Hoyt DW, Eder E, Eloe-Fadrosh E, Sharrar A, Tfaily MM, Toyoda J, Tolic N, Wang S, Wong AR, Williams KH, Zhong Y, Brodie EL.   +18 more
europepmc   +1 more source

Depth-resolved paired metagenomes and metatranscriptomes from the Lake Erie 'dead zone'. [PDF]

Microbiol Resour Announc
Brown KM, Beall BFN, Bullerjahn GS, Finlay JC, Glavina Del Rio T, Small GE, Sterner RW, McKay RM.   +7 more
europepmc   +1 more source

<i>NifH</i> gene amplicon sequencing and metagenomic approaches are complementary in assessing diazotroph diversity. [PDF]

ISME Commun
Cheung S, Morando M, Magasin J, Cornejo-Castillo FM, Zehr JP, Turk-Kubo KA.   +5 more
europepmc   +1 more source

Diversity and evolution of viroids and viroid-like agents with circular RNA genomes revealed by metatranscriptome mining. [PDF]

Nucleic Acids Res
Koonin EV, Lee BD.
europepmc   +1 more source

Diversity and distribution of the lanthanome in aerobic methane-oxidising bacteria. [PDF]

Environ Microbiome
Dandare SU, Allenby A, Silvano E, Nockemann P, Chen Y, Smith TJ, Kumaresan D.   +6 more
europepmc   +1 more source

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Deciphering Metatranscriptomic Data

2014
Metatranscriptomic data contributes another piece of the puzzle to understanding the phylogenetic structure and function of a community of organisms. High-quality total RNA is a bountiful mixture of ribosomal, transfer, messenger and other noncoding RNAs, where each family of RNA is vital to answering questions concerning the hidden microbial world ...
Kopylova, Evguenia, Noé, Laurent, da Silva, Corinne, Berthelot, Jean-Frédéric, Alberti, Adriana, Aury, Jean-Marc, Touzet, Helene   +6 more
openaire   +4 more sources

Quantitative Microbial Metatranscriptomics

2014
The direct retrieval and sequencing of environmental RNA is emerging as a powerful technique to elucidate the in situ activities of microbial communities. Here we provide a metatranscriptomic protocol describing environmental sample collection, rRNA depletion, mRNA amplification, cDNA synthesis, and bioinformatic analysis.
Scott, Gifford, Brandon, Satinsky, Mary Ann, Moran   +2 more
openaire   +2 more sources

Gene Expression Profiling: Metatranscriptomics

2011
Metatranscriptomics has been developed to help understand how communities respond to changes in their environment. Metagenomic studies provided a snapshot of the genetic composition of the community at any given time. However, short-timescale studies investigating the response of communities to rapid environmental changes (e.g.
Jack A, Gilbert, Margaret, Hughes
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Metatranscriptomics of Soil Eukaryotic Communities

2016
Functions expressed by eukaryotic organisms in soil can be specifically studied by analyzing the pool of eukaryotic-specific polyadenylated mRNA directly extracted from environmental samples. In this chapter, we describe two alternative protocols for the extraction of high-quality RNA from soil samples.
Yadav, Rajiv, Bragalini, Claudia, Fraissinet-Tachet, Laurence, Marmeisse, Roland, Luis, Patricia   +4 more
openaire   +3 more sources