Results 181 to 190 of about 4,884 (222)

Anoxia-adapted cyanobacteria in a marine blue hole. [PDF]

Appl Environ Microbiol
Li Z, Zhang H, Wei T, He L, Wang Y.
europepmc   +1 more source

HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using freshwater metatranscriptomics from Lake Hula. [PDF]

Biophys Physicobiol
Takahashi H, Takaramoto S, Nagata T, Fainsod S, Kato Y, Béjà O, Inoue K.   +6 more
europepmc   +1 more source

Multi-meta-omics reveal unique symbiotic synchronization between ectomycorrhizal fungus and soil microbiome in Tricholoma matsutake habitat. [PDF]

Microbiome
Bae IH, Kim H, Kim SM, Lee YH.
europepmc   +1 more source

Soil-dwelling Naegleria enhances plant performance by stimulating beneficial bacterial functions in the rhizosphere. [PDF]

Nat Commun
Yue Y, Xu Z, Wang Y, Liu C, Sun S, Ren X, Lv Q, Liu J, Dini-Andreote F, Xiong W, Shen Q.   +10 more
europepmc   +1 more source

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Deciphering Metatranscriptomic Data

2014
Metatranscriptomic data contributes another piece of the puzzle to understanding the phylogenetic structure and function of a community of organisms. High-quality total RNA is a bountiful mixture of ribosomal, transfer, messenger and other noncoding RNAs, where each family of RNA is vital to answering questions concerning the hidden microbial world ...
Kopylova, Evguenia, Noé, Laurent, da Silva, Corinne, Berthelot, Jean-Frédéric, Alberti, Adriana, Aury, Jean-Marc, Touzet, Helene   +6 more
openaire   +4 more sources

Quantitative Microbial Metatranscriptomics

2014
The direct retrieval and sequencing of environmental RNA is emerging as a powerful technique to elucidate the in situ activities of microbial communities. Here we provide a metatranscriptomic protocol describing environmental sample collection, rRNA depletion, mRNA amplification, cDNA synthesis, and bioinformatic analysis.
Scott, Gifford, Brandon, Satinsky, Mary Ann, Moran   +2 more
openaire   +2 more sources

Application of metatranscriptomics to soil environments

Journal of Microbiological Methods, 2012
The activities of soil microbial communities are of critical importance to terrestrial ecosystem functioning. The mechanisms that determine the interactions between soil microorganisms, their environment and neighbouring organisms, however, are poorly understood.
Carvalhais, Lilia C., Dennis, Paul G., Tyson, Gene W., Schenk, Peer M.   +3 more
openaire   +5 more sources

Metagenomics and Metatranscriptomics

2022
International ...
Guyomar, Cervin, Lemaitre, Claire
openaire   +1 more source

Metatranscriptomics of Soil Eukaryotic Communities

2016
Functions expressed by eukaryotic organisms in soil can be specifically studied by analyzing the pool of eukaryotic-specific polyadenylated mRNA directly extracted from environmental samples. In this chapter, we describe two alternative protocols for the extraction of high-quality RNA from soil samples.
Yadav, Rajiv, Bragalini, Claudia, Fraissinet-Tachet, Laurence, Marmeisse, Roland, Luis, Patricia   +4 more
openaire   +3 more sources

Metatranscriptomic analyses of the oral microbiome

Periodontology 2000, 2020
AbstractAlthough the composition of the oral human microbiome is now well studied, regulation of genes within oral microbial communities remains mostly uncharacterized. Current concepts of periodontal disease and caries highlight the importance of oral biofilms and their role as etiological agents of those diseases.
openaire   +2 more sources