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Application of metatranscriptomics to soil environments
Journal of Microbiological Methods, 2012The activities of soil microbial communities are of critical importance to terrestrial ecosystem functioning. The mechanisms that determine the interactions between soil microorganisms, their environment and neighbouring organisms, however, are poorly understood.
Carvalhais, Lilia C. +3 more
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Metagenomics and Metatranscriptomics
2022International ...
Guyomar, Cervin, Lemaitre, Claire
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Metatranscriptomic analyses of the oral microbiome
Periodontology 2000, 2020AbstractAlthough the composition of the oral human microbiome is now well studied, regulation of genes within oral microbial communities remains mostly uncharacterized. Current concepts of periodontal disease and caries highlight the importance of oral biofilms and their role as etiological agents of those diseases.
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Understanding Rhizosphere Through Metatranscriptomic Approaches
2021The rhizosphere is a closely proximate area where plant roots and PGPR live together and produce various organic molecules, which boost plant growth and immunity. Metatranscriptomics is the best technique to study unexplored or unidentified microbes that help plants in terms of growth and also elicit induced systemic resistance against various plant ...
Rajni Kant Thakur +5 more
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Metatranscriptomics: A Tool for Clinical Metagenomics
OMICS: A Journal of Integrative BiologyIn the field of bioinformatics, amplicon sequencing of 16S rRNA genes has long been used to investigate community membership and taxonomic abundance in microbiome studies. As we can observe, shotgun metagenomics has become the dominant method in this field.
Shivani Tyagi, Pramod Katara
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Enhancing Arbovirus Surveillance with Metatranscriptomics
2021Submitted in total fulfilment of the requirements for the degree of Doctor of Philosophy to the School of Applied Systems Biology, College of Science, Health and Engineering, La Trobe University, Victoria.This thesis was a recipient of the Nancy Millis Award for theses of exceptional merit.
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Usage of Metatranscriptomics to Understand Oral Disease
2021Metatranscriptomics is a method used to comprehensively capture bacterial activity within microbiota at the transcription level. It has become an alternative to the 16S rDNA sequencing, which uses only the 16S rRNA gene for predicting bacterial composition.
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Metatranscriptomics analysis of mangroves habitats around Mauritius
World Journal of Microbiology and Biotechnology, 2018Mangroves are unique but endangered coastal ecosystems that play a vital role in the tropical and subtropical environments. Mauritius has two species of mangroves, Bruguiera gymnorrhiza (L.) Lam. and Rhizophora mucronata Lam., growing along its coast.
Sillma Rampadarath +4 more
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A Hitchhiker’s Guide to Metatranscriptomics
2016Recent technological development in high throughput DNA sequencing has opened many venues for biological systems analysis, where the data generation is no longer the bottleneck but its analysis. The sequencing technological advancements are being used in the study of a large and previously unknown microbe world; this unknown world has revealed itself ...
Mariana Peimbert, Luis David Alcaraz
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Metatranscriptome and Resistome of the Endodontic Microbiome
Journal of EndodonticsIn this study, we used metatranscriptomics for the first time to investigate microbial composition, functional signatures, and antimicrobial resistance gene expression in endodontic infections.Root canal samples were collected from ten teeth, including five primary and five persistent/secondary endodontic infections.
Pinheiro, Ericka T +9 more
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