Results 151 to 160 of about 5,063 (236)

Phylogenetic reconstruction of NCLDV major capsid protein sequences from environmental metatranscriptomes generated from an alkaline soil sample (NCBI ID: SRP043976), the Amazon River and River Delta (SRP037995, SRP039544 [21]), the North Pacific Ocean (SRP052554 [22]), Station ALOHA in the tropical Pacific Ocean (CAM_SMPL_000824 at iMicrobe.us [23]), and the North Sea (ERP004582 [24]).

, 2016
Public metatranscriptomes were assembled and searched for NCLDV-like major capsid protein coding transcripts. MCP contigs >300 bp with best hits to NCLDVs were aligned with an MCP reference database and placed on a maximum likelihood tree with a ...
Samantha R. Coy (3216111), Joshua M. A. Stough (3216105), Steven W. Wilhelm (116660), Eric R. Gann (3216108), Mohammad Moniruzzaman (2495296)   +4 more
core   +1 more source

Transcriptomic response of the picoalga Pelagomonas calceolata to nitrogen availability: new insights into cyanate lyase function

Microbiology Spectrum
Cyanate (OCN−) is an organic nitrogen compound found in aquatic environments potentially involved in phytoplankton growth. Given the prevalence and activity of cyanate lyase genes in eukaryotic microalgae, cyanate has been suggested as an alternative ...
Nina Guérin, Chloé Seyman, Céline Orvain, Laurie Bertrand, Priscillia Gourvil, Ian Probert, Benoit Vacherie, Élodie Brun, Ghislaine Magdelenat, Karine Labadie, Patrick Wincker, Adrien Thurotte, Quentin Carradec   +12 more
doaj   +1 more source

Feedback on a c omparative metatranscriptomic analysis

, 2019
The progress of next generation sequencing favors the development of more comprehensive ecosystem studies thanks to metatranscriptomic approaches. These latter can indeed provide access to functional information at a good analysis depth. Through a study of anaerobic digesters treating anionic surfactant contaminated wastewater [1] (namely the linear ...
Midoux, Cedric, Delforno, Tiago P., Macedo, Thais Z., Lacerda, Gileno V., Rué, Olivier, Mariadassou, Mahendra, Varesche, Maria B.A., Bouchez, Théodore, Bize, Ariane, Oliveira, Valéria M., Loux, Valentin   +10 more
openaire   +2 more sources

Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly

BMC Bioinformatics, 2023
Arianna I. Krinos, Natalie R. Cohen, Michael J. Follows, Harriet Alexander   +3 more
doaj   +1 more source

Anvi'o files MGs and MTs for Candidatus Nobermanella desum

, 2018
Anvio v.4 files for 3 metagenomes and 2 metatranscriptomes mapped onto Candidatus 'Nobermanella desum' (i.e., DWH O. desum v2).Metagenomes were first published at:---https://www.nature.com/articles/ismej201259---Credit for generating the metagenomes ...
tom delmont (3227814)
core   +1 more source

freshwater metagenome Raw sequence reads

, 2017
Metatranscriptomes prepared from microbial (5 - 0.2um) sized plankton collected ~ monthly from 3 freshwater lakes (Seneca, Cayuga and Owasco Lakes, central New York State ...
Cornell University (1228884)
core  

Evidence of an acetone carboxylation pathway in photoheterotrophic bacteria from the Arctic Ocean. [PDF]

Nat Commun
McLatchie S, Palestini S, Woodhead A, Gutierrez T, Walsh DA.   +4 more
europepmc   +1 more source

Aerobic anoxygenic phototrophs are widespread and active members of Greenland Ice Sheet microbiomes. [PDF]

FEMS Microbiol Ecol
Keuschnig C, Feord HK, Broadwell ELM, Zervas A, Tranter M, Anesio AM, Benning LG.   +6 more
europepmc   +1 more source

The impact of modulator therapy on the <i>Pseudomonas aeruginosa</i> cystic fibrosis lung transcriptome. [PDF]

Proc Natl Acad Sci U S A
Letizia M, Whiteley LE, Diggle FL, Davis AN, Morgan SJ, Grogan B, Baugh J, McKone EF, Singh PK, Whiteley M.   +9 more
europepmc   +1 more source

Magnetotaxis in an anaerobic ciliate via tripartite syntrophy. [PDF]

Proc Natl Acad Sci U S A
Chitnis M, Kaub L, Vďačný P, Beiers LM, Sturm S, Coskun ÖK, Mills DB, Gomez-Saez GV, Mengue L, Gottschaldt KD, Gilder SA, Obert T, Rurik I, Sturm EV, Orsi WD.   +14 more
europepmc   +1 more source