Results 61 to 70 of about 5,063 (236)

Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses

Frontiers in Microbiology, 2020
Microbial mat communities possess extensive taxonomic and functional diversity, which drive high metabolic rates and rapid cycling of major elements.
Matthew A. Campbell, Kliti Grice, Pieter T. Visscher, Pieter T. Visscher, Therese Morris, Hon Lun Wong, Hon Lun Wong, Richard Allen White, Richard Allen White, Richard Allen White, Brendan P. Burns, Brendan P. Burns, Marco J. L. Coolen   +12 more
doaj   +1 more source

Analysis of bronchoalveolar lavage fluid metatranscriptomes among patients with COVID-19 disease

Scientific Reports, 2022
To better understand the potential relationship between COVID-19 disease and hologenome microbial community dynamics and functional profiles, we conducted a multivariate taxonomic and functional microbiome comparison of publicly available human ...
Michael Jochum, Michael D. Lee, Kristen Curry, Victoria Zaksas, Elizabeth Vitalis, Todd Treangen, Kjersti Aagaard, Krista L. Ternus   +7 more
doaj   +1 more source

Metatranscriptomic analyses of honey bee colonies [PDF]

Frontiers in Genetics, 2015
Honey bees face numerous biotic threats from viruses to bacteria, fungi, protists, and mites. Here we describe a thorough analysis of microbes harbored by worker honey bees collected from field colonies in geographically distinct regions of Turkey. Turkey is one of the World's most important centers of apiculture, harboring five subspecies of Apis ...
Tozkar, Cansu Özge, EVANS, Jay D., Kence, Meral, Kence, Aykut, HUANG, Qiang   +4 more
openaire   +4 more sources

Advances and Challenges in Metatranscriptomic Analysis

Frontiers in Genetics, 2019
Sequencing-based analyses of microbiomes have traditionally focused on addressing the question of community membership and profiling taxonomic abundance through amplicon sequencing of 16 rRNA genes. More recently, shotgun metagenomics, which involves the random sequencing of all genomic content of a microbiome, has dominated this arena due to ...
Migun Shakya, Chien-Chi Lo, Patrick S. G. Chain   +2 more
openaire   +3 more sources

Metatranscriptomic census of active protists in soils [PDF]

The ISME Journal, 2015
Abstract The high numbers and diversity of protists in soil systems have long been presumed, but their true diversity and community composition have remained largely concealed. Traditional cultivation-based methods miss a majority of taxa, whereas molecular barcoding approaches employing PCR introduce significant biases in reported ...
Geisen, S., Tveit, A. T., Clark, I. M., Richter, A., Svenning, M. M., Bonkowski, M., Urich, T.   +6 more
openaire   +4 more sources

Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel [PDF]

, 2010
Both metagenomic data and metatranscriptomic data were collected from surface water (0-2m) of the L4 sampling station (50.2518 N, 4.2089 W), which is part of the Western Channel Observatory long-term coastal-marine monitoring station.
Muhling, M, Joint, IR, Gilbert, JA, Meyer, F, Field, D, Schriml, L, Mühling, Martin, Schriml, Lynn, Gilbert, Jack A., Field, Dawn, Meyer, Folker, Joint, Ian R., Jack A. Gilbert, Ian R Joint, Lynn Schriml, Folker Meyer, Dawn Field, Martin Mühling   +17 more
core   +1 more source

MetaTrans: an open-source pipeline for metatranscriptomics [PDF]

Scientific Reports, 2016
Abstract To date, meta-omic approaches use high-throughput sequencing technologies, which produce a huge amount of data, thus challenging modern computers. Here we present MetaTrans, an efficient open-source pipeline to analyze the structure and functions of active microbial communities using the power of multi ...
Martinez, Xavier, Pozuelo, Marta, Pascal, Victoria, Campos, David, Gut, Ivo Glynne, Gut, Marta, Azpiroz, Fernando, Guarner, Francisco, Manichanh, Chaysavanh   +8 more
openaire   +2 more sources

Additional file 7 of Seasonal patterns in microbial carbon and iron transporter expression in the Southern Ocean

, 2023
Additional file 7: Supplementary Figure 7. Phylogenetic tree of 50 metagenomes assembled genomes from the Co-Assembly with additional information on the expression of transporter proteins in metatranscriptomes and metaproteomes.
Ying Sun (16853148), Pavla Debeljak (16853142), Barbara Bayer (16853145), Gerhard J. Herndl (10785096), Ingrid Obernosterer (16853151)   +4 more
core   +1 more source

Metatranscriptome of the Oral Microbiome in Health and Disease [PDF]

Journal of Dental Research, 2018
The last few decades have witnessed an increasing interest in studying the human microbiome and its role in health and disease. The focus of those studies was mainly the characterization of changes in the composition of the microbial communities under different conditions.
J. Solbiati, J. Frias-Lopez
openaire   +2 more sources

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation. [PDF]

PLoS ONE, 2010
How microbial communities change over time in response to the environment is poorly understood. Previously a six-year time series of 16S rRNA V6 data from the Western English Channel demonstrated robust seasonal structure within the bacterial community ...
Jack A Gilbert, Dawn Field, Paul Swift, Simon Thomas, Denise Cummings, Ben Temperton, Karen Weynberg, Susan Huse, Margaret Hughes, Ian Joint, Paul J Somerfield, Martin Mühling   +11 more
doaj   +1 more source