Results 111 to 120 of about 18,529 (279)

Soil eukaryotic functional diversity, a metatranscriptomic approach [PDF]

The ISME Journal, 2007
Abstract To appreciate the functional diversity of communities of soil eukaryotic micro-organisms we evaluated an experimental approach based on the construction and screening of a cDNA library using polyadenylated mRNA extracted from a forest soil.
Bailly, Julie, Fraissinet-Tachet, Laurence, Verner, Marie-Christine, Debaud, Jean-Claude, Lemaire, Marc, Wésolowski-Louvel, Micheline, Marmeisse, Roland   +6 more
openaire   +3 more sources

Metatranscriptomic exploration of microbial functioning in clouds [PDF]

Scientific Reports, 2019
AbstractClouds constitute the uppermost layer of the biosphere. They host diverse communities whose functioning remains obscure, although biological activity potentially participates to atmospheric chemical and physical processes. In order to gain information on the metabolic functioning of microbial communities in clouds, we conducted coordinated ...
Amato, Pierre, Besaury, Ludovic, Joly, Muriel, Penaud, Benjamin, Deguillaume, Laurent, Delort, Anne-Marie   +5 more
openaire   +3 more sources

When to suspect contamination rather than colonization – lessons from a putative fetal sheep microbiome

Gut Microbes, 2022
There is an ongoing controversy around the existence of a prenatal, fetal microbiome in humans, livestock, and other animals. The ‘in utero microbial colonization’ hypothesis challenges the clinical paradigm of the ‘sterile womb’ but has been criticized ...
Simone Bihl, Marcus de Goffau, Daniel Podlesny, Nicola Segata, Fergus Shanahan, Jens Walter, W. Florian Fricke   +6 more
doaj   +1 more source

Integrative Metatranscriptomic Analysis Reveals Disease-specific Microbiome–host Interactions in Oral Squamous Cell Carcinoma [PDF]

, 2023
Vinay Jain, Divyashri Baraniya, Doaa E. El-Hadedy, Tsute Chen, Michael Slifker, Fadhl Alakwaa, Kathy Q. Cai, Kumaraswamy Naidu Chitrala, Christopher Fundakowski, Nezar N. Al‐Hebshi   +9 more
openalex   +1 more source

Genomics and metatranscriptomics of biogeochemical cycling and degradation of lignin-derived aromatic compounds in thermal swamp sediment

The ISME Journal, 2020
Thermal swamps are unique ecosystems where geothermally warmed waters mix with decomposing woody biomass, hosting novel biogeochemical-cycling and lignin-degrading microbial consortia.
David J. Levy-Booth, A. Hashimi, Raphael Roccor, Li-Yang Liu, Scott Renneckar, L. Eltis, W. Mohn   +6 more
semanticscholar   +1 more source

Metatranscriptome analysis of the reef-building coral Orbicella faveolata indicates holobiont response to coral disease [PDF]

, 2015
White Plague Disease (WPD) is implicated in coral reef decline in the Caribbean and is characterized by microbial community shifts in coral mucus and tissue.
Arif, Chatchanit, Baumgarten, Sebastian, Bayer, Till, Daniels, Camille A., Michell, Craig T., Roder, Cornelia, Voolstra, Christian R., Weil, Ernesto, Yum, Lauren K.   +8 more
core   +2 more sources

Identification of novel fructo-oligosaccharide bacterial consumers by pulse metatranscriptomics in a human stool sample

mSphere
Dietary fibers influence the composition of the human gut microbiota and directly contribute to its downstream effects on host health. As more research supports the use of glycans as prebiotics for therapeutic applications, the need to identify the gut ...
Catherine Prattico, Emmanuel Gonzalez, Lharbi Dridi, Shiva Jazestani, Kristin E. Low, D. Wade Abbott, Corinne F. Maurice, Bastien Castagner   +7 more
doaj   +1 more source

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. [PDF]

, 2019
Inflammatory bowel diseases, which include Crohn's disease and ulcerative colitis, affect several million individuals worldwide. Crohn's disease and ulcerative colitis are complex diseases that are heterogeneous at the clinical, immunological, molecular,
Ajami, Nadim J, Ananthakrishnan, Ashwin N, Andrews, Elizabeth, Arze, Cesar, Avila-Pacheco, Julian, Bonham, Kevin S, Braun, Jonathan, Brislawn, Colin J, Casero, David, Clish, Clary B, Courtney, Holly, Denson, Lee A, Franzosa, Eric A, Gonzalez, Antonio, Graeber, Thomas G, Hall, A Brantley, Huttenhower, Curtis, IBDMDB Investigators, Jansson, Janet K, Knight, Rob, Kugathasan, Subra, Lake, Kathleen, Landers, Carol J, Lloyd-Price, Jason, Mallick, Himel, McGovern, Dermot PB, Petrosino, Joseph F, Plichta, Damian R, Poon, Tiffany W, Prasad, Mahadev, Rahnavard, Gholamali, Sauk, Jenny, Schirmer, Melanie, Shungin, Dmitry, Stappenbeck, Thaddeus S, Vlamakis, Hera, Vázquez-Baeza, Yoshiki, White, Richard A, Winter, Harland S, Xavier, Ramnik J   +39 more
core  

Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses

Frontiers in Microbiology, 2020
Microbial mat communities possess extensive taxonomic and functional diversity, which drive high metabolic rates and rapid cycling of major elements.
Matthew A. Campbell, Kliti Grice, Pieter T. Visscher, Pieter T. Visscher, Therese Morris, Hon Lun Wong, Hon Lun Wong, Richard Allen White, Richard Allen White, Richard Allen White, Brendan P. Burns, Brendan P. Burns, Marco J. L. Coolen   +12 more
doaj   +1 more source

The function of our microbiota : who is out there and what do they do? [PDF]

, 2012
Current meta-omics developments provide a portal into the functional potential and activity of the intestinal microbiota. The comparative and functional meta-omics approaches have made it possible to get a molecular snap shot of microbial function at a ...
Clara eBelzer, Hauke eSmidt, Noora eOttman, Willem M de Vos, Willem M de Vos   +4 more
core   +1 more source