Results 121 to 130 of about 9,285 (257)

Spatial metaTranscriptomics resolves host-bacteria-fungi interactomes

, 2023
Microbial diversity forms complex interaction networks with the host. Despite the recent advances in infection biology to study the host response and quantify microbes, we lack a comprehensive understanding of the microbial diversity at the spatial scale
Ashkenazy, H. ; https://orcid.org/, Weigel, D. ; https://orcid.org/, Saarenpää, S., Shalev, O. ; https://orcid.org/, Carlos, V., Lundberg, D. ; https://orcid.org/, Giacomello, S.   +6 more
core  

Long‐Term Cultivation of Perennial Energy Crops Enhance Ecosystem Multifunctionality on Marginal Red Soil Without Trade‐Offs

GCB Bioenergy, Volume 18, Issue 7, July 2026.
Switchgrass (SG) and Miscanthus (MS) boost ecosystem multifunctionality in marginal soils. Strong synergies, not trade‐offs, exist among ecosystem services under SG and MS. MS surpasses SG in provisioning and supporting services for higher multifunctionality. MS is ideal for maximizing multifunctionality, carbon sequestration, and stability.
Yini Wu (伍旖旎), Yi Xu (许依), Tongcheng Fu (傅童成), Meng Li (李蒙), Moritz von Cossel, Grant Campbell, Pete Smith, Yasir Iqbal, Zili Yi (易自力), Shuai Xue (薛帅)   +9 more
wiley   +1 more source

Metatranscriptomics of the human gut microbiome [PDF]

Genome Biology, 2011
Our ‘other’ genome is the collective genetic information in all of the microorganisms that are living on and within us. Collectively known as the microbiome, these microbial cells outnumber human cells in the body by more than 10 to 1, and the genes carried by these organisms outnumber the genes in the human genome by more than 100 to 1.
openaire   +1 more source

Probiotics Augment the Effect of Non‐Surgical Periodontal Treatment—A Randomised, Double‐Blinded, Placebo‐Controlled Trial

Journal of Clinical Periodontology, Volume 53, Issue 7, Page 1016-1030, July 2026.
ABSTRACT Aim To determine the effect of probiotic lozenges containing Lacticaseibacillus rhamnosus PB01, Latilactobacillus curvatus EB10 and xylitol after non‐surgical periodontal treatment (NSPT) on changes in microbial composition. The secondary aims were to assess the clinical and immunological impact of probiotic consumption.
Christine Marie Lundtorp‐Olsen, Sara Vallentin Raae Andersen, Laura Massarenti, Mervi Gürsoy, Annina van Splunter, Floris J. Bikker, Ulvi Kahraman Gursoy, Merete Markvart, Christian Damgaard, Daniel Belstrøm   +9 more
wiley   +1 more source

Targeted Metatranscriptomics of Soil Microbial Communities with Stable Isotope Probing

, 2019
Metatranscriptomics is a powerful tool for capturing gene expression patterns in microbial communities and investigating their responses to environmental conditions.
Lu, Yahai, Yahai Lu, Dumont, Marc, Dumont, M., Lu, Y., Hernández, Marcela, Marcela Hernández García, Hu, Ang, Ang Hu, Garcia, M., Marc G. Dumont, Hu, A.   +11 more
core   +1 more source

Linking Plant Metabolomics with Fungal Functional Dynamics Reveals a Noncanonical S‐R‐C Adaptive Trajectory

Advanced Science, Volume 13, Issue 31, 4 June 2026.
Using field‐based holo‐omics, we demonstrate that developmental shifts in sorghum leaf metabolomes drive a noncanonical fungal succession from stress tolerators (S) through ruderals (R) to competitors (C). Antifungal metabolites in young leaves select for S strategists with expanded genomes, transient maltose pulses during flowering favor fast‐growing ...
Peilin Chen, John W. Taylor, Cheng Gao
wiley   +1 more source

Integrated Metabolomics and Gut Microbiota Analysis Reveal the Intestinal Stress Response of Juvenile Four‐Finger Threadfin (Eleutheronema tetradactylum) to Nitrite Exposure

Aquaculture, Fish and Fisheries, Volume 6, Issue 3, June 2026.
Nitrite exposure induces intestinal stress in juvenile Eleutheronema tetradactylum, characterized by microbial dysbiosis, metabolic reprogramming, and altered digestive enzyme activities. Integrated metabolomics and microbiota analyses reveal coordinated hostmicrobe responses involving key pathways such as ABC transporters and amino acid metabolism ...
Yue Liu, Jing‐Hui Jin, Eric Amenyogbe, Shu‐Pei Huang, Hao‐Jie Wang, Eric Kwabena Droepenu, Zhong‐Liang Wang, Jian‐Sheng Huang   +7 more
wiley   +1 more source

Identification of Key Microbial Signatures Associated With Breast Cancer: Machine Learning‐Based Approaches Using Gut Microbiome Data

Cancer Medicine, Volume 15, Issue 6, June 2026.
This study investigates the potential of the gut microbiome as a non‐invasive biomarker for breast cancer (BC) using a machine learning (ML) framework. Utilizing 16S rRNA gene sequencing data from the NCBI database for 962 individuals (520 BC patients and 442 healthy controls), we processed the sequences through a FastQC, QIIME2, and DADA2 pipeline ...
Md. Tanvir Ahmed, Samriddha Majumdar, Abdullah Al Noman, Md. Jahangir Alam, Md. Jahangir Alam   +4 more
wiley   +1 more source

Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities

, 2013
Soil presents one of the most complex environments for microbial communities as it provides many microhabitats that allow coexistence of thousands of species with important ecosystem functions.
Carvalhais, Lilia C., Schenk, Peer M., Lilia C. Carvalhais, Peer M. Schenk   +3 more
core   +1 more source

A Comprehensive Review of the Key Factors Affecting Biogas Production From Anaerobic Digestion of Organic Waste

CleanMat, Volume 3, Issue 2, Page 74-98, June 2026.
Efficient conversion of organic waste to biogas depends on the coordinated optimization of feedstock composition, pretreatment, operational parameters, reactor design, and microbial community dynamics. This review highlights how these interacting factors improve methane yield and process stability, advancing anaerobic digestion as a practical pathway ...
Ahmed Alengebawy, Yi Ran, Sara Taha Abdelkhalek, Tarek Mahrous, Ahmed Ragheb, Mohamed Samer, Ping Ai   +6 more
wiley   +1 more source