Results 111 to 120 of about 14,226 (247)

Periodontitis and Inflammatory Bowel Diseases: Mechanistic Evidence

Journal of Periodontal Research, EarlyView.
This review aims to provide a conceptual framework for understanding the mechanistic interplay between periodontitis and IBD, with a particular emphasis on the microbial and immunological crosstalk linking the oral cavity and the gastrointestinal tract.
Ana Paula V. Colombo, Adriana M. de Oliveira, Nobuhiko Kamada, Sho Kitamoto   +3 more
wiley   +1 more source

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics [PDF]

, 2010
Metatranscriptomes generated by pyrosequencing hold significant potential for describing functional processes in complex microbial communities. Meeting this potential requires protocols that maximize mRNA recovery by reducing the relative abundance of ...
AW Bergen, AW Briggs, B Rodriguez-Brito, C Su, CD Armour, D Dalevi, DE Hunt, DH Huson, DR Yoder-Himes, Edward F DeLong, EF DeLong, EF DeLong, Elizabeth A Ottesen, Frank J Stewart, I Hewson, I Hewson, J Frias-Lopez, JA Gilbert, KC McGrath, KN Ballantyne, RS Poretsky, RS Poretsky, S Audic, T Urich, V Gomez-Alvarez, VF Wendisch, W Li, Y Benjamini, Y Shi   +28 more
core   +1 more source

Ecological and genomic variation in ectomycorrhizal fungal exploration types

New Phytologist, EarlyView.
Summary Ectomycorrhizal fungi (EMF) produce mycelia with variable extension and complexity, which can be classified according to soil ‘exploration types’ (ETs). ETs have received attention as one of the few mycorrhizal trait frameworks, but without an empirical classification of ET functional diversity and environmental preferences, understanding and ...
Thomas M. Mansfield, Artin Zarsav, Filipa Cox, Laura M. Suz, Martin I. Bidartondo, Sietse van der Linde, Nadia Barsoum, Colin Averill, Alan Kuo, Leho Tedersoo, Pasi Rautio, Arthur Gessler, Bruno De Vos, Luc Croisé, Henning Meesenburg, Markus Wagner, Frank Jacob, Paweł Lech, Anna Kowalska, Martin Greve, Genoveva Popova, Beat Frey, Marcus Schaub, Marco Ferretti, Peter Waldner, Vicent Calatayud, Roberto Canullo, Giancarlo Papitto, Aleksander Marinšek, Lars Vesterdal, Morten Ingerslev, Helge Meissner, Volkmar Timmermann, Nadine Eickenscheidt, Andreas Schmitz, Francis M. Martin, Joseph Spatafora, Peter G. Kennedy, Annegret Kohler, Jonathan M. Plett, Ian C. Anderson, Sara Branco, Igor V. Grigoriev, Chris J. Pires, Sarah A. Unruh, Lawrence W. Zettler, Otto Miettinen, Ilya Viner, Tom W. May, Teresa Lebel, David E. A. Catcheside, Pamela S. Catcheside, Helen P. Vonow, Leigh A. Burgoyne, Julia Haska, Mark A. Anthony   +55 more
wiley   +1 more source

Total rRNA-Seq Analysis Gives Insight into Bacterial, Fungal, Protozoal and Archaeal Communities in the Rumen Using an Optimized RNA Isolation Method

Frontiers in Microbiology, 2017
Advances in high throughput, next generation sequencing technologies have allowed an in-depth examination of biological environments and phenomena, and are particularly useful for culture-independent microbial community studies.
Chijioke O. Elekwachi, Zuo Wang, Zuo Wang, Xiaofeng Wu, Alaa Rabee, Robert J. Forster   +5 more
doaj   +1 more source

The Future of Pathogen Detection in Aquaculture: Miniature Labs, Field‐Compatible Assays, environmental DNA and RNA, CRISPR and Metatranscriptomics

Aquaculture, Fish and Fisheries
Inland recirculating aquaculture is a thriving food industry providing sustainable and locally sourced high‐quality protein. However, its expansion is accompanied by emerging challenges regarding the spread of pathogens and diseases.
Jessica Rieder, Anastasiia Berezenko, Alexandra Meziti, Irene Adrian‐Kalchhauser   +3 more
doaj   +1 more source

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp strain PCC 7120 to combined-nitrogen deprivation [PDF]

, 2011
Background: Cyanobacteria are potential sources of renewable chemicals and biofuels and serve as model organisms for bacterial photosynthesis, nitrogen fixation, and responses to environmental changes. Anabaena (Nostoc) sp.
Flaherty, Britt L, Van Nieuwerburgh, Filip, Head, Steven R, Golden, James W   +3 more
core   +3 more sources

Plant and soil biodiversity reveals past and potential future states of naturally regenerating and planted native forests

Restoration Ecology, EarlyView.
Abstract Introduction Forest restoration can be achieved by promoting natural regeneration or planting tree seedlings, but the relative benefits of these widely used approaches are questioned. Soil communities may influence restoration outcomes but are usually ignored by monitoring schemes.
Andrew Dopheide, Gwen‐Aelle Grelet, James K. McCarthy, Peter J. Bellingham, Bruce Burns, Carina Davis, Alexander J. Fergus, Duckchul Park, Luitgard Schwendenmann, Robyn Simcock, Mahajabeen Padamsee   +10 more
wiley   +1 more source

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

mSystems, 2018
Ruminant livestock is a major source of the potent greenhouse gas methane. The complex rumen microbiome, consisting of bacteria, archaea, and microbial eukaryotes, facilitates anaerobic plant biomass degradation in the cow rumen, leading to methane ...
Andrea Söllinger, Alexander Tøsdal Tveit, Morten Poulsen, Samantha Joan Noel, Mia Bengtsson, Jörg Bernhardt, Anne Louise Frydendahl Hellwing, Peter Lund, Katharina Riedel, Christa Schleper, Ole Højberg, Tim Urich   +11 more
doaj   +1 more source

Transcriptome analysis of bacteriophage communities in periodontal health and disease. [PDF]

, 2015
BackgroundThe role of viruses as members of the human microbiome has gained broader attention with the discovery that human body surfaces are inhabited by sizeable viral communities.
Abeles, Shira R, Boehm, Tobias K, Ly, Melissa, Naidu, Mayuri, Pride, David T, Santiago-Rodriguez, Tasha M   +5 more
core   +2 more sources

The grapevine microbiota: A review on the possible impacts of plant protection programs on phyllosphere microorganisms

Annals of Applied Biology, Volume 189, Issue 1, July 2026.
This review highlights recent advances in understanding how plant protection programs and alternative fungicides affect the taxonomic composition of the grapevine phyllosphere microbiota. Bacterial and fungal communities are primarily shaped by the plant compartment, vineyard location, and sampling time. Plant protection programs generally have a minor
Sofia Montanari, Anna Smaldone, Veronica Castellari, Claudia M. O. Longa, Michael Oberhuber, Peter Robatscher, Michele Perazzolli   +6 more
wiley   +1 more source