Results 101 to 110 of about 9,285 (257)

Total rRNA-Seq Analysis Gives Insight into Bacterial, Fungal, Protozoal and Archaeal Communities in the Rumen Using an Optimized RNA Isolation Method

Frontiers in Microbiology, 2017
Advances in high throughput, next generation sequencing technologies have allowed an in-depth examination of biological environments and phenomena, and are particularly useful for culture-independent microbial community studies.
Chijioke O. Elekwachi, Zuo Wang, Zuo Wang, Xiaofeng Wu, Alaa Rabee, Robert J. Forster   +5 more
doaj   +1 more source

The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics

, 2021
Data used in the Lambert et al. manuscript 'The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics'.This work was funded by the Simons Foundation through Award #426570SP to E.V.A & A.E.W ...
White, Angelique, Durham, Bryndan, Alverson, Andrew, Groussman, Ryan, Armbrust, E. Virginia, Lambert, Bennett, Coesel, Sacha, Schatz, Megan   +7 more
core   +1 more source

Ecological and genomic variation in ectomycorrhizal fungal exploration types

New Phytologist, EarlyView.
Summary Ectomycorrhizal fungi (EMF) produce mycelia with variable extension and complexity, which can be classified according to soil ‘exploration types’ (ETs). ETs have received attention as one of the few mycorrhizal trait frameworks, but without an empirical classification of ET functional diversity and environmental preferences, understanding and ...
Thomas M. Mansfield, Artin Zarsav, Filipa Cox, Laura M. Suz, Martin I. Bidartondo, Sietse van der Linde, Nadia Barsoum, Colin Averill, Alan Kuo, Leho Tedersoo, Pasi Rautio, Arthur Gessler, Bruno De Vos, Luc Croisé, Henning Meesenburg, Markus Wagner, Frank Jacob, Paweł Lech, Anna Kowalska, Martin Greve, Genoveva Popova, Beat Frey, Marcus Schaub, Marco Ferretti, Peter Waldner, Vicent Calatayud, Roberto Canullo, Giancarlo Papitto, Aleksander Marinšek, Lars Vesterdal, Morten Ingerslev, Helge Meissner, Volkmar Timmermann, Nadine Eickenscheidt, Andreas Schmitz, Francis M. Martin, Joseph Spatafora, Peter G. Kennedy, Annegret Kohler, Jonathan M. Plett, Ian C. Anderson, Sara Branco, Igor V. Grigoriev, Chris J. Pires, Sarah A. Unruh, Lawrence W. Zettler, Otto Miettinen, Ilya Viner, Tom W. May, Teresa Lebel, David E. A. Catcheside, Pamela S. Catcheside, Helen P. Vonow, Leigh A. Burgoyne, Julia Haska, Mark A. Anthony   +55 more
wiley   +1 more source

The Future of Pathogen Detection in Aquaculture: Miniature Labs, Field‐Compatible Assays, environmental DNA and RNA, CRISPR and Metatranscriptomics

Aquaculture, Fish and Fisheries
Inland recirculating aquaculture is a thriving food industry providing sustainable and locally sourced high‐quality protein. However, its expansion is accompanied by emerging challenges regarding the spread of pathogens and diseases.
Jessica Rieder, Anastasiia Berezenko, Alexandra Meziti, Irene Adrian‐Kalchhauser   +3 more
doaj   +1 more source

sj-xls-5-evb-10.1177_11769343221083960 – Supplemental material for Metatranscriptomics Analysis Reveals Diverse Viral RNA in Cutaneous Papillomatous Lesions of Cattle

, 2022
Supplemental material, sj-xls-5-evb-10.1177_11769343221083960 for Metatranscriptomics Analysis Reveals Diverse Viral RNA in Cutaneous Papillomatous Lesions of Cattle by Adriana O Fernandes, Gerlane S Barros and Marcus VA Batista in Evolutionary ...
Adriana O Fernandes (12240671), Gerlane S Barros (12240674), Marcus VA Batista (12240677)   +2 more
core   +1 more source

Protists show high resilience and thrive under multiple chemical stressors

mLife, EarlyView.
Jijuan Ding, Fei Liu, Yuanchen Zhao, Zhili He, Yijing Shi, Longfei Shu   +5 more
wiley   +1 more source

Investigating GERMs: how genotype, environment, and rhizosphere microbiome interactions underlie heat response in maize and sorghum

New Phytologist, EarlyView.
Three genotypes – a heat‐resistant maize (Zea mays), a heat‐susceptible maize, and a sorghum (Sorghum bicolor) variety – were grown to the V4 stage in growth chambers under optimal conditions or subjected to heat stress. Plants were grown in soil containing a complex microbial community, or in the same soil with a depleted microbiome.
Nate Korth, Isabella Borrero, Katelyn Rumley, Alex L. Woodley, Mallory J. Choudoir, Joseph L. Gage   +5 more
wiley   +1 more source

Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation

mSystems, 2018
Ruminant livestock is a major source of the potent greenhouse gas methane. The complex rumen microbiome, consisting of bacteria, archaea, and microbial eukaryotes, facilitates anaerobic plant biomass degradation in the cow rumen, leading to methane ...
Andrea Söllinger, Alexander Tøsdal Tveit, Morten Poulsen, Samantha Joan Noel, Mia Bengtsson, Jörg Bernhardt, Anne Louise Frydendahl Hellwing, Peter Lund, Katharina Riedel, Christa Schleper, Ole Højberg, Tim Urich   +11 more
doaj   +1 more source

High-throughput terrestrial biodiversity assessments: mitochondrial metabarcoding, metagenomics or metatranscriptomics?

, 2019
Consensus on the optimal high-throughput sequencing (HTS) approach to examine biodiversity in mixed terrestrial arthropod samples has not been reached. Metatranscriptomics could increase the proportion of taxonomically informative mitochondrial reads in ...
KW Sing (15783263), HM Gan (14144889), GJ Brandon-Mong (15783260), JJ Wilson (15783257)   +3 more
core  

sj-xls-3-evb-10.1177_11769343221083960 – Supplemental material for Metatranscriptomics Analysis Reveals Diverse Viral RNA in Cutaneous Papillomatous Lesions of Cattle

, 2022
Supplemental material, sj-xls-3-evb-10.1177_11769343221083960 for Metatranscriptomics Analysis Reveals Diverse Viral RNA in Cutaneous Papillomatous Lesions of Cattle by Adriana O Fernandes, Gerlane S Barros and Marcus VA Batista in Evolutionary ...
Adriana O Fernandes (12240671), Gerlane S Barros (12240674), Marcus VA Batista (12240677)   +2 more
core   +1 more source