Results 121 to 130 of about 13,896 (217)

Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function

Environmental Microbiology Reports, Volume 18, Issue 2, April 2026.
Graphical abstract illustrating the workflow and key findings of this study. We first applied SPIEC‐EASI to metagenomic abundance data to construct microbial co‐occurrence networks and selected the top 15 MAGs based on degree centrality. We then used CARlasso to detect relationships between the top MAGs and environmental features.
Qiyao Yang, Rosa Aghdam, Patricia Q. Tran, Karthik Anantharaman, Claudia Solís‐Lemus   +4 more
wiley   +1 more source

Unraveling the lung metatranscriptome in HCT [PDF]

Blood, 2021
Alpana Waghmare, Sina A. Gharib
openaire   +2 more sources

Unraveling the Stratification of an Iron-Oxidizing Microbial Mat by Metatranscriptomics

, 2014
International audienceA metatranscriptomic approach was used to study community gene expression in a naturally occurring iron-rich microbial mat. Total microbial community RNA was reversely transcribed and sequenced by pyrosequencing. Characterization of
Bodi, Xavier, Coudouel, Sophie, Dheilly, Alexandra, Dufresne, Alexis, Francez, Andre-Jean, Naquin, Delphine, Pédrot, Mathieu, Quaiser, Achim, Vandenkoornhuyse, Philippe   +8 more
core   +5 more sources

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies [PDF]

, 2018
\ud \ud Background\ud Lignocellulose is one of the most abundant forms of fixed carbon in the biosphere. Current industrial approaches to the degradation of lignocellulose employ enzyme mixtures, usually from
A Klindworth, A Krogh, A Medina, Adam A. Dowle, AE Pérez-Cobas, AK Biswal, AL Pometto, AM Alessi, Anna M. Alessi, AS Johnson-Rollings, B Xiao, BL Mello, BL Mello, C Damon, C Quast, C Trapnell, C Wang, CA Rezende, CJ Newbold, CW Simmons, D Floudas, DA Neher, DH Huson, DJ Jiménez, DJ Jiménez, DJ Jiménez, EA Franzosa, Eduardo R. deAzevedo, EH Novotny, Etelvino H. Novotny, F Francocci, GR Lewin, H Nielsen, H Piao, H Teeling, H Wei, Igor Polikarpov, J Liang, J Ni, J. Peter W. Young, JA López-González, Joseph P. Bennett, K Hadziavdic, L Chen, L Cortes-Tolalpa, LF Martins, LP Antunes, LR Lynd, M Garber, M Lever, M Martín-Cereceda, M Saleem, MG Grabherr, N Ivanova, Neil C. Bruce, Nicola C. Oates, NP McNulty, OE Petrova, OU Mason, P Rice, R Sun, RH Wilson, RI Griffiths, RJ Ram, RL Johnson, S Heiss-Blanquet, S Wu, SA Eichorst, SC Goslee, Simon J. McQueen-Mason, ST Bates, Susannah M. Bird, T Schneider, V Gannes de, V Gannes de, V Lionetti, VS Varma, W Mhuantong, Y Ishihama, Y Xia, Y Yin, Yi Li   +81 more
core   +4 more sources

Spatial Patterns and Overlap of Sedimentary and Rhizosphere Microbiomes of the Seagrass Zostera capensis

Environmental Microbiology Reports, Volume 18, Issue 2, April 2026.
Sedimentary microbiomes and, for the first time, rhizosphere microbiomes of Zostera capensis, South Africa's most abundant seagrass, were characterised using 16S rRNA metabarcoding across three estuaries. After accounting for seawater‐derived microbes, we found that sediment and rhizosphere communities largely overlapped but also harbor distinct core ...
Andrew Ndhlovu, Sophie von der Heyden
wiley   +1 more source

Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate [PDF]

, 2016
© The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 21871, doi:10.1038/srep21871.Traditional cheeses harbour complex ...
De Filippis, Francesca, Ercolini, Danilo, Ferranti, Pasquale, Genovese, Alessandro, Gilbert, Jack A.   +4 more
core   +3 more sources

Rhizosphere Microbiome as an Underexplored Resource for Agroecosystem Sustainability: Insights From the Carrot Root Zone

Environmental Microbiology Reports, Volume 18, Issue 2, April 2026.
The diagram represents the generalised pathways for the ecological activities mediated by the rhizosphere microbiome within crop‐soil interactions, based on existing literature. The conceptual pathways are adapted for the carrot root‐zone context described in this review. These activities include the transformation of organic matter, promotion of plant
Alaba Adewole Adebayo, Olubukola Oluranti Babalola   +1 more
wiley   +1 more source

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

Frontiers in Microbiology, 2015
Anthropogenic N deposition alters patterns of C and N cycling in temperate forests, where forest floor litter decomposition is a key process mediated by a diverse community of bacteria and fungi.
Cedar N Hesse, Rebecca C Mueller, Momchilo eVuyisich, La Verne eGallegos-Graves, Cheryl D Gleasner, Donald R Zak, Cheryl R Kuske   +6 more
doaj   +1 more source

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics [PDF]

, 2017
Obligate acidophilic members of the thaumarchaeotal genus Candidatus Nitrosotalea play an important role in nitrification in acidic soils, but their evolutionary and physiological adaptations to acidic environments are still poorly understood, with only ...
Albertsen, Alkoby, Baker-Austin, Bankevich, Bayer, Beam, Berube, Booth, Bramwell, Contreras-Moreira, Călinescu, Darling, Edgar, Finn, Goris, Groeneveld, Grüber, Gubry-Rangin, Gubry-Rangin, Hausmann, Hayatsu, Herrmann, Hink, Hosie, Huber, Hunt, Hwang, Hyatt, Jung, Jung, Katoh, Kerou, Konstantinidis, Kurtz, Lartillot, Lehtovirta-Morley, Lehtovirta-Morley, Lehtovirta-Morley, Li, Lu, Luo, Luo, Macqueen, Nakanishi, Nawrat, Offre, Padan, Parks, Pester, Price, Richter, Rinke, Robertson, Ryan, Sato, Spang, Stamatakis, Tettelin, Trias, Vallenet, Varghese, Vico Oton, Violante, von Uexküll, Willenbrock, Yarza, Yeoh   +66 more
core   +3 more sources

Valorization of corn husk waste: Xylooligosaccharides as a sustainable prebiotic enhance growth, gut health, and fillet quality in Nile tilapia (Oreochromis niloticus)

Journal of the World Aquaculture Society, Volume 57, Issue 2, April 2026.
Abstract Xylooligosaccharides (XOS) are advantageous prebiotics that promote sustainable aquaculture. The growth performance, gut microbiota, and fillet composition of juvenile Nile tilapia (Oreochromis niloticus) were investigated in relation to the prebiotic effects of corn husk‐derived XOS, extracted using alkaline extraction and autohydrolysis ...
Jesca Chikwiramakomo, Claudious Gufe, Tawanda Ashley Chari, Prosper Jambwa, Vimbai R. Hamandishe   +4 more
wiley   +1 more source