The expanded diversity of methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes. [PDF]
PLoS ONE, 2014 We describe five novel Methylophilaceae ecotypes from a single ecological niche in Lake Washington, USA, and compare them to three previously described ecotypes, in terms of their phenotype and genome sequence divergence.
David A C Beck +9 more
doaj +6 more sources
Soil bacterial community composition in rice-turtle coculture systems with different planting years [PDF]
Scientific Reports, 2023 The rice-turtle coculture system is the most special rice-fish integrated farming system. In this study, we selected four paddy fields, including a rice monoculture paddy and three rice-turtle paddies with different planting years, to investigate the ...
Ren Wang +9 more
doaj +2 more sources
Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation [PDF]
PeerJ, 2013 We carried out whole transcriptome analysis of three species of Methylophilaceae, Methylotenera mobilis, Methylotenera versatilis and Methylovorus glucosotrophus, in order to determine which metabolic pathways are actively transcribed in cultures grown ...
Alexey Vorobev +4 more
doaj +4 more sources
Microbiota of the Rearing Water of Penaeus stylirostris Larvae Influenced by Lagoon Seawater and Specific Key Microbial Lineages of Larval Stage and Survival [PDF]
Microbiology Spectrum, 2022 Aquacultured animals are reared in water, where they interact with microorganisms which can be involved in their development, immunity, and disease. It is therefore interesting to study the rearing water microbiota, especially in the hatcheries of the ...
Nolwenn Callac +8 more
doaj +2 more sources
A Novel Freshwater to Marine Evolutionary Transition Revealed within Methylophilaceae Bacteria from the Arctic Ocean [PDF]
mBio, 2021 Global warming is profoundly influencing the Arctic Ocean. Rapid ice melt and increased freshwater input is increasing ocean stratification, driving shifts in nutrient availability and the primary production that supports marine food webs.
Arthi Ramachandran +2 more
doaj +2 more sources
A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae [PDF]
PeerJ, 2013 We investigated microbial communities active in methane oxidation in lake sediment at different oxygen tensions and their response to the addition of nitrate, via stable isotope probing combined with deep metagenomic sequencing.
David A.C. Beck +7 more
doaj +3 more sources
A long-read sequencing approach to high-resolution profiling of bacterioplankton diversity in a shallow freshwater lake [PDF]
Scientific ReportsLake Balaton, a large shallow freshwater lake in Hungary, exhibits diverse bacterioplankton communities influenced by various environmental factors. This study aims to evaluate the bacterial diversity in Lake Balaton using the long-read approach to 16 S ...
Stephanie O. Castro Márquez +4 more
doaj +2 more sources
Impact of plants on the diversity and activity of methylotrophs in soil [PDF]
Microbiome, 2020 Background Methanol is the second most abundant volatile organic compound in the atmosphere, with the majority produced as a metabolic by-product during plant growth.
Michael C. Macey +3 more
doaj +5 more sources
Impact of Dust Storms on Airborne Bacteria, Heavy Metals, and Inflammatory Markers in Asthmatic Patients [PDF]
MicrobiologyOpenAsthma, a chronic bronchial disorder prevalent in children/adolescents, is exacerbated under environmental conditions like dust storms. The current study investigated heavy metal levels, airborne bacteria, and serum IL‐4/IL‐8 in asthmatics during before ...
Alaa Al‐Husseini +2 more
doaj +2 more sources
Structural and functional properties of bacterial communities associated with rootless duckweed (Wolffia globosa) and their effect on the Wolffia growth [PDF]
Environmental MicrobiomeBackground Rootless duckweed, Wolffia globosa, is emerging as a high-protein and starch biomass resource for various applications. However, the microbiomes and functional properties associated with Wolffia across a wide range of microbial sources remain ...
Yuparat Saimee +5 more
doaj +2 more sources