Results 11 to 20 of about 1,636 (148)

SIP metagenomics identifies uncultivated Methylophilaceae as dimethylsulphide degrading bacteria in soil and lake sediment. [PDF]

The ISME Journal, 2015
Dimethylsulphide (DMS) has an important role in the global sulphur cycle and atmospheric chemistry. Microorganisms using DMS as sole carbon, sulphur or energy source, contribute to the cycling of DMS in a wide variety of ecosystems.
A Chauhan, A Lana, A Lapidus, Andrew Mead, AWB Johnston, BP Lomans, BP Lomans, CJ Scarlata, D Wu, DAC Beck, DE Wood, DH Parks, DJ Lane, E Crespo, E Hutchens, F Bak, F Meyer, G Muyzer, GD Bending, H Kadota, H Schäfer, H Schäfer, Hendrik Schäfer, J Eisen, JD Neufeld, JD Neufeld, JD Neufeld, JD Neufeld, JG Caporaso, JMM de Zwart, K Finster, K Kurokawa, L Chistoserdova, L Chistoserdova, MG Dumont, MG Kalyuzhnaya, MO Andreae, Motonobu Namura, NA Smith, O Nercessian, PK Quinn, PT Visscher, R Bentley, R Boden, RJ Charlson, RP Kiene, S Boisvert, S Radajewski, S Sivelä, SA Morris, SF Altschul, SF Watts, SG Tringe, SH Zinder, Siva Samavedam, T Kanagawa, TO Delmont, TW Keenan, WAD Whitfield, WJ Sul, Y Zhang, Yin Chen, Özge Eyice   +62 more
core   +7 more sources

Draft genome sequences of five new strains of methylophilaceae isolated from lake washington sediment. [PDF]

Genome Announcements, 2015
We sequenced the genomes of five new Methylophilaceae strains isolated from Lake Washington sediment. We used the new sequences to sort these new strains into specific Methylophilaceae ecotypes, including one novel ecotype.
Benuska, Gabrielle, Chistoserdova, Ludmila, McTaggart, Tami L, Shapiro, Nicole, Woyke, Tanja   +4 more
core   +6 more sources

Natural Selection in Synthetic Communities Highlights the Roles of Methylococcaceae and Methylophilaceae and Suggests Differential Roles for Alternative Methanol Dehydrogenases in Methane Consumption [PDF]

Frontiers in Microbiology, 2017
We describe experiments that follow species dynamics and gene expression patterns in synthetic bacterial communities including species that compete for the single carbon substrate supplied, methane, and species unable to consume methane, which could only
Zheng Yu, David A. C. Beck, David A. C. Beck, Ludmila Chistoserdova   +3 more
doaj   +3 more sources

Methane-powered sea spiders: Diverse, epibiotic methanotrophs serve as a source of nutrition for deep-sea methane seep <i>Sericosura</i>. [PDF]

Proc Natl Acad Sci U S A
Methane seeps harbor uncharacterized animal-microbe symbioses with unique nutritional strategies. Three undescribed sea spider species (family Ammotheidae; genus Sericosura) endemic to methane seeps were found along the eastern Pacific margin, from ...
Dal Bó B, Guo Y, Mayr MJ, Pereira OS, Levin LA, Orphan VJ, Goffredi SK.   +6 more
europepmc   +3 more sources

Diversity and distribution of the lanthanome in aerobic methane-oxidising bacteria [PDF]

Environmental Microbiome
Background Lanthanides (Ln) play important and often regulatory roles in the metabolism of methylotrophs, including methanotrophs, particularly through their involvement in methanol oxidation.
Shamsudeen Umar Dandare, Alexander Allenby, Eleonora Silvano, Peter Nockemann, Yin Chen, Thomas J. Smith, Deepak Kumaresan   +6 more
doaj   +2 more sources

Microbial potential to mitigate neurotoxic methylmercury accumulation in farmlands and rice [PDF]

Nature Communications
Toxic methylmercury (CH3Hg+) is produced by microbial conversion of inorganic mercury in hypoxic environments such as rice paddy soils, and can accumulate in rice grains. Although microbial demethylation has been recognized as a crucial pathway for CH3Hg+
Xin-Quan Zhou, Kang-Hua Chen, Ri-Qing Yu, Man Yang, Qin Liu, Yun-Yun Hao, Jibing Li, Hui-Wen Liu, Jiao Feng, Wenfeng Tan, Qiaoyun Huang, Baohua Gu, Yu-Rong Liu   +12 more
doaj   +2 more sources

Succession of Particle-Attached and Free-Living Microbial Communities in Response to the Degradation of Algal Organic Matter in Lake Taihu, China. [PDF]

Environ Microbiol Rep
Investigating microbial degradation processes of algal organic matter using fractionation procedure reveals the differential ecological effects of the two distinct algal organic matter fractions from the same lysed cyanobacterial cells on freshwater bacterial communities.
Chen J, Zhou Y, Zhang Y, Guo Q, Zhang S, Ge G, Jin W.   +6 more
europepmc   +2 more sources

Proteomic evidence for aerobic methane production in groundwater by methylotrophic Methylotenera. [PDF]

ISME J
Members of Methylotenera are signature denitrifiers and methylotrophs commonly found together with methanotrophic bacteria in lakes and freshwater sediments.
Li S, Dong X, Humez P, Borecki J, Birks J, McClain C, Mayer B, Strous M, Diao M.   +8 more
europepmc   +3 more sources

Seasonal dynamics of bacterial community structure and function in the surf zone seawater of a recreational beach in Ostend, Belgium. [PDF]

Environ Microbiol Rep
This study involved year‐long, weekly monitoring of bacterial community composition and predicted functions in the surf zone seawater of a recreational beach in Ostend, Belgium, using full‐length 16S rRNA gene sequencing. The data were then correlated with environmental factors to identify potential drivers.
Li Y, Hablützel PI, Liu Z, Van Acker E, Janssen CR, Asselman J, De Rijcke M.   +6 more
europepmc   +2 more sources

Flexible genomic island conservation across freshwater and marine Methylophilaceae. [PDF]

ISME J
Abstract The evolutionary trajectory of Methylophilaceae includes habitat transitions from freshwater sediments to freshwater and marine pelagial that resulted in genome reduction (genome-streamlining) of the pelagic taxa. However, the extent of genetic similarities in the genomic structure and microdiversity of the two genome ...
Layoun P, López-Pérez M, Haro-Moreno JM, Haber M, Thrash JC, Henson MW, Kavagutti VS, Ghai R, Salcher MM.   +8 more
europepmc   +4 more sources