Results 1 to 10 of about 8,085 (125)

Core of the saliva microbiome: an analysis of the MG-RAST data [PDF]

BMC Oral Health, 2021
Background Oral microbiota is considered as the second most complex in the human body and its dysbiosis can be responsible for oral diseases. Interactions between the microorganism communities and the host allow establishing the microbiological proles ...
Simone G. Oliveira, Rafaela R. Nishiyama, Claudio A. C. Trigo, Ana Luiza Mattos-Guaraldi, Alberto M. R. Dávila, Rodrigo Jardim, Flavio H. B. Aguiar   +6 more
doaj   +5 more sources

A RESTful API for accessing microbial community data for MG-RAST. [PDF]

PLoS Computational Biology, 2015
Metagenomic sequencing has produced significant amounts of data in recent years. For example, as of summer 2013, MG-RAST has been used to annotate over 110,000 data sets totaling over 43 Terabases.
Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M Glass, Narayan Desai, Folker Meyer   +11 more
doaj   +5 more sources

The MG-RAST API explorer: an on-ramp for RESTful query composition [PDF]

BMC Bioinformatics, 2019
Background The MG-RAST API provides search capabilities and delivers organism and function data as well as raw or annotated sequence data via the web interface and its RESTful API.
Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer   +5 more
doaj   +5 more sources

The MG-RAST metagenomics database and portal in 2015. [PDF]

Nucleic Acids Res, 2016
MG-RAST (http://metagenomics.anl.gov) is an open-submission data portal for processing, analyzing, sharing and disseminating metagenomic datasets. The system currently hosts over 200,000 datasets and is continuously updated. The volume of submissions has increased 4-fold over the past 24 months, now averaging 4 terabasepairs per month.
Wilke A, Bischof J, Gerlach W, Glass E, Harrison T, Keegan KP, Paczian T, Trimble WL, Bagchi S, Grama A, Chaterji S, Meyer F.   +11 more
europepmc   +4 more sources

Comparative evaluation of rumen metagenome community using qPCR and MG-RAST. [PDF]

AMB Express, 2013
Abstract Microbial profiling of metagenome communities have been studied extensively using MG-RAST and other related metagenome annotation databases. Although, database based taxonomic profiling provides snapshots of the metagenome architecture, their reliability needs to be validated through more accurate methods.
Nathani NM, Patel AK, Dhamannapatil PS, Kothari RK, Singh KM, Joshi CG.   +5 more
europepmc   +4 more sources

MG-RAST version 4-lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. [PDF]

Brief Bioinform, 2019
Abstract As technologies change, MG-RAST is adapting. Newly available software is being included to improve accuracy and performance. As a computational service constantly running large volume scientific workflows, MG-RAST is the right location to perform benchmarking and implement algorithmic or platform improvements, in many cases ...
Meyer F, Bagchi S, Chaterji S, Gerlach W, Grama A, Harrison T, Paczian T, Trimble WL, Wilke A.   +8 more
europepmc   +4 more sources

Effect of caffeine supplementation on anaerobic and aerobic performance in sleep-restricted male college soccer players [PDF]

Frontiers in Physiology
This study aimed to explore the effects of sleep restriction of ≤5 h within 24 h on anaerobic and aerobic performance in male college soccer players and evaluated the effects of acute supplementation of 3 mg⋅kg−1 caffeine on the aerobic and anaerobic ...
Ruiqi Cheng, Ruiqi Cheng, Ning Wang, Weili He, Zeng Zhou, Zhen Chen, Xiaotian Li, Xiaotian Li   +7 more
doaj   +2 more sources

Metagenomic data from the rumen of South African Mutton Merino sheep supplemented with crude or encapsulated Acacia tannin extracts [PDF]

BMC Genomic Data
Objectives This dataset was generated as part of a study investigating the impact of crude and encapsulated Acacia mearnsii tannin extracts on the rumen microbiota of South African Mutton Merino sheep. The aim was to provide high-quality metagenomic data
Abiodun Mayowa Akanmu, Imrana-Bakare Lawal, Shehu Lurwanu Ibrahim, Este van Marle-Köster, Abubeker Hassen   +4 more
doaj   +2 more sources

Combined Effects of Postactivation Performance Enhancement and Caffeine Intake on Explosive and Anaerobic Power in Recreationally Active Males [PDF]

Current Developments in Nutrition
Background: Both post-activation performance enhancement (PAPE) and caffeine (CAF) are known to acutely improve physical performance. However, their combined effects on multiple performance outcomes in recreationally active individuals remain ...
Nazila Heydari, Mahsa Shojaee, Javad Nemati, Ahmad Reza Dehghani, Alireza Niknam, Fereshte Eftekhari, Mohammad Hemmatinafar   +6 more
doaj   +2 more sources

MACROSCOPIC CROSS SECTIONS GENERATION BY MONTE CARLO CODE MCS FOR FAST REACTOR ANALYSIS [PDF]

EPJ Web of Conferences, 2021
Recent researches have become more interested in the feasibility of using Monte Carlo (MC) code to generate multi-group (MG) cross sections (XSs) for fast reactor analysis using nodal diffusion codes.
Nguyen Tung Dong Cao, Lee Hyunsuk, Du Xianan, Dos Vutheam, Tran Tuan Quoc, Lee Deokjung   +5 more
doaj   +1 more source