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A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST

Proceedings of the 2016 ACM SIGSIM Conference on Principles of Advanced Discrete Simulation, 2016
As the cost of DNA sequencing has decreased, computational biology data processing platforms are experiencing an increasingly large volume of data analysis requests. The metagenomics analysis server MG-RAST at Argonne National Laboratory, a computational biology data processing platform, is receiving several terabytes of data submissions per month ...
Caitlin Ross   +8 more
openaire   +1 more source

MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function

2016
Approaches in molecular biology, particularly those that deal with high-throughput sequencing of entire microbial communities (the field of metagenomics), are rapidly advancing our understanding of the composition and functional content of microbial communities involved in climate change, environmental pollution, human health, biotechnology, etc ...
Kevin P, Keegan   +2 more
openaire   +2 more sources

Bacterial communities and metabolic functions profiled by MG-RAST

Saja A. Fakhraldeen   +2 more
openaire   +1 more source

Comparative evaluation of MG-RAST, MEGAN6 and Kraken2 for whole metagenome analysis of saffron corms for bacterial community structure and function

Molecular Genetics and Genomics
Nitika Sharma   +4 more
openaire   +1 more source

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