Results 11 to 20 of about 8,085 (125)

Metagenomic analysis of soybean endosphere microbiome to reveal signatures of microbes for health and disease

Journal of Genetic Engineering and Biotechnology, 2023
Background Soil metagenomics is a cultivation-independent molecular strategy for investigating and exploiting the diversity of soil microbial communities.
Usha Chouhan, Umesh Gamad, Jyoti Kant Choudhari   +2 more
doaj   +1 more source

Shotgun metagenomic sequencing data of sunflower rhizosphere microbial community in South Africa

Data in Brief, 2020
This dataset presents shotgun metagenomic sequencing of sunflower rhizosphere microbiome in Bloemhof, South Africa. Data were collected to decipher the structure and function in the sunflower microbial community.
Olubukola Oluranti Babalola, Temitayo Tosin Alawiye, Carlos Rodriguez Lopez, Ayansina Segun Ayangbenro   +3 more
doaj   +1 more source

Microbial Composition and Genes for Key Metabolic Attributes in the Gut Digesta of Sea Urchins Lytechinus variegatus and Strongylocentrotus purpuratus Using Shotgun Metagenomics

Current Issues in Molecular Biology, 2021
This paper describes the microbial community composition and genes for key metabolic genes, particularly the nitrogen fixation of the mucous-enveloped gut digesta of green (Lytechinus variegatus) and purple (Strongylocentrotus purpuratus) sea urchins by ...
Joseph A. Hakim, George B. H. Green, Stephen A. Watts, Michael R. Crowley, Casey D. Morrow, Asim K. Bej   +5 more
doaj   +1 more source

An experience report: porting the MG‐RAST rapid metagenomics analysis pipeline to the cloud [PDF]

Concurrency and Computation: Practice and Experience, 2011
SUMMARYExisting applications in computational biology typically favor a local cluster based integrated computational platform. We present a lessons learned type report for scaling up an existing metagenomics application that outgrew the available local cluster hardware.
Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan L. Desai, Folker Meyer   +4 more
openaire   +1 more source

Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions

Journal of Microbiological Methods, 2021
Environmental microbiome studies rely on fast and accurate bioinformatics tools to characterize the taxonomic composition of samples based on the 16S rRNA gene. MetaGenome Rapid Annotation using Subsystem Technology (MG-RAST) and Quantitative Insights Into Microbial Ecology 2 (QIIME2) are two of the most popular tools available to perform this task ...
Lima, J., Manning, T., Rutherford, K. M., Baima, E. T., Dewhurst, R. J., Walsh, P., Roehe, R.   +6 more
openaire   +2 more sources

Functional Metagenomics of the Bronchial Microbiome in COPD. [PDF]

PLoS ONE, 2015
The course of chronic obstructive pulmonary disease (COPD) is frequently aggravated by exacerbations, and changes in the composition and activity of the microbiome may be implicated in their appearance.
Laura Millares, Vicente Pérez-Brocal, Rafaela Ferrari, Miguel Gallego, Xavier Pomares, Marian García-Núñez, Concepción Montón, Silvia Capilla, Eduard Monsó, Andrés Moya   +9 more
doaj   +1 more source

Shotgun metagenomics dataset of Striga hermonthica-infested maize (Zea mays L.) rhizospheric soil microbiome

Data in Brief, 2023
This dataset includes shotgun metagenomics sequencing of the rhizosphere microbiome of maize infested with Striga hermonthica from Mbuzini, South Africa, and Eruwa, Nigeria.
Olubukola Oluranti Babalola, Olumayowa Mary Olowe, Ayansina Segun Ayangbenro   +2 more
doaj   +1 more source

Soil microbial diversity and functional profiling of a tropical rainforest of a highly dissected low hill from the upper Itaya river basin revealed by analysis of shotgun metagenomics sequencing data

Data in Brief, 2022
The tropical rainforest of a highly dissected low hill from the upper Itaya river basin belongs to the western Amazonia region. Some investigations on the biodiversity of these rainforests were more focused on animals and plants diversity.
Marianela Cobos, Segundo L. Estela, Hicler N. Rodríguez, Carlos G. Castro, Miguel Grandez, Juan C. Castro   +5 more
doaj   +1 more source

MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes

Environmental Microbiome, 2022
Background Metagenomics is an expanding field within microbial ecology, microbiology, and related disciplines. The number of metagenomes deposited in major public repositories such as Sequence Read Archive (SRA) and Metagenomic Rapid Annotations using ...
Muhammad Kabiru Nata’ala, Anderson P. Avila Santos, Jonas Coelho Kasmanas, Alexander Bartholomäus, João Pedro Saraiva, Sandra Godinho Silva, Tina Keller-Costa, Rodrigo Costa, Newton C. M. Gomes, André Carlos Ponce de Leon Ferreira de Carvalho, Peter F. Stadler, Danilo Sipoli Sanches, Ulisses Nunes da Rocha   +12 more
doaj   +1 more source

O efeito agudo do Rast Test sobre o estresse oxidativo e os marcadores de danos musculares em atletas jovens

Revista da Educação Física, 2018
Poucos estudos abordam os efeitos dos exercícios de alta intensidade e curta duração como o RAST TEST, o que pode favorecer o adequado controle das sessões de treino e, consequentemente, o desempenho atlético.
Patrícia Morgana Ferreira Santos, Lúcio Marques Vieira Souza, Matias Batista dos Santos, João Eliakim dos Santos Araújo, Jymmys Lopes dos Santos, Isis Barbosa dos Santos, Natanael Vinicius Sena Santos, Emerson Pardono   +7 more
doaj   +1 more source