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Stochastic Community Assembly: Does It Matter in Microbial Ecology? [PDF]
Understanding the mechanisms controlling community diversity, functions, succession, and biogeography is a central, but poorly understood, topic in ecology, particularly in microbial ecology.
Ning, Daliang, Zhou, Jizhong
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Background Cultivation-independent methods, including metagenomics, are tools for the exploration and discovery of biotechnological compounds produced by microbes in natural environments.
Ohana Y. A. Costa +4 more
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Current Challenges and Pitfalls in Soil Metagenomics
Soil microbial communities are essential components of agroecological ecosystems that influence soil fertility, nutrient turnover, and plant productivity.
Marcio F. A. Leite +2 more
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Marine crude-oil biodegradation: a central role for interspecies interactions [PDF]
The marine environment is highly susceptible to pollution by petroleum, and so it is important to understand how microorganisms degrade hydrocarbons, and thereby mitigate ecosystem damage. Our understanding about the ecology, physiology, biochemistry and
Folwell, Benjamin D +3 more
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PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases
The increase in sequencing capacity has amplified the number of taxonomically unclassified sequences in most databases. The classification of such sequences demands phylogenetic tree construction and comparison to currently classified sequences, a ...
Ohana Y. A. Costa +3 more
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The Chemistry of Stress: Understanding the ‘Cry for Help’ of Plant Roots
Plants are faced with various biotic and abiotic stresses during their life cycle. To withstand these stresses, plants have evolved adaptive strategies including the production of a wide array of primary and secondary metabolites.
Muhammad Syamsu Rizaludin +3 more
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Microbial and metabolic succession on common building materials under high humidity conditions. [PDF]
Despite considerable efforts to characterize the microbial ecology of the built environment, the metabolic mechanisms underpinning microbial colonization and successional dynamics remain unclear, particularly at high moisture conditions. Here, we applied
Cardona, Cesar +12 more
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Safeguarding the microbial water quality from source to tap
Anthropogenic activities and climate change can deteriorate the freshwater quality and stress its availability. This stress can, in turn, have an impact on the biostability of drinking water.
Jorien Favere +5 more
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Background Due to the DNA triplet code, it is possible that the sequences of two or more protein-coding genes overlap to a large degree. However, such non-trivial overlaps are usually excluded by genome annotation pipelines and, thus, only a few ...
Sarah M. Hücker +6 more
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Effect of Ethanol on Microbial Community Structure and Function During Natural Attenuation of Benzene, Toluene, and \u3cem\u3eo\u3c/em\u3e-Xylene in a Sulfate-reducing Aquifer [PDF]
Ethanol (EtOH) is a commonly used fuel oxygenate in reformulated gasoline and is an alternative fuel and fuel supplement. Effects of EtOH release on aquifer microbial ecology and geochemistry have not been well characterized in situ.
Chakraborty, Irina +6 more
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