Results 221 to 230 of about 1,840,918 (247)

Virome datasets and viral metagenome-assembled genomes from aquaculture-impacted freshwater environments. [PDF]

Sci Data
Moon K, Kang I, Cho JC.
europepmc   +1 more source

Methanotrophy under extreme alkalinity in a serpentinizing system. [PDF]

Nat Commun
Howells AEG, Robinson K, Silva MG, Cook E, Fifer L, Boyer G, Hoehler T, Shock EL.   +7 more
europepmc   +1 more source

Depth-resolved partitioning of phytoplankton and bacterial communities in a seasonally stratified large lake. [PDF]

Microbiol Resour Announc
Brown KM, Rozmarynowycz MJ, Glavina Del Rio T, Rudstam LG, McKay RM.   +4 more
europepmc   +1 more source

Exploring the <i>Tenebrio molitor</i> gut microbiota response to LDPE and PET: putative genetic indicators and methodological insights. [PDF]

Front Microbiol
Biełło K, Rodríguez-Caballero G, Becerra-Mora D, Dorado-Blanco N, Sáez-Melero LP, Moreno-Vivián C, Luque-Almagro VM, Olaya-Abril A, Roldán MD.   +8 more
europepmc   +1 more source

Decoding a Microbial Community for Healthy Kelp: 403 MAGs from the World's Largest Kelp Farming Region. [PDF]

Sci Data
Wang Y, Yu P, Huang ES, Lu DC, Zhang W.
europepmc   +1 more source

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial) [PDF]

Frontiers in Microbiology, 2015
Metagenomic investigations hold great promise for informing the genetics, physiology, and ecology of environmental microorganisms. Current challenges for metagenomic analysis are related to our ability to connect the dots between sequencing reads, their population of origin, and their encoding functions.
Adina Howe, Patrick Chain
exaly   +5 more sources

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Metagenomic sequencing reveals swine lung microbial communities and metagenome-assembled genomes associated with lung lesions—a pilot study

International Microbiology, 2023
Low microbial biomass in the lungs, high host-DNA contamination and sampling difficulty limit the study on lung microbiome. Therefore, little is still known about lung microbial communities and their functions. Here, we perform a preliminary exploratory study to investigate the composition of swine lung microbial community using shotgun metagenomic ...
Jingquan, Li, Tao, Huang, Mingpeng, Zhang, Xinkai, Tong, Jiaqi, Chen, Zhou, Zhang, Fei, Huang, Huashui, Ai, Lusheng, Huang   +8 more
openaire   +2 more sources

Simple, reference-independent analyses help optimize hybrid assembly of microbial community metagenomes

2023
Abstract Hybrid metagenomic assembly, leveraging both long- and short-read sequencing technologies, of microbial communities is becoming an increasingly accessible approach, yet its widespread application faces several challenges. High-quality references may not be available for assembly accuracy comparisons common for benchmarking, and
Garrett J. Smith, Theo van Alen, Maartje van Kessel, Sebastian Lücker   +3 more
openaire   +1 more source

Metagenome Assembly for Gut Microbial Functional Diversity Associated with Xenobiotic Degradation

2021
Ashok Kumar Sharma, Vinay Shankar Dubey
openaire   +1 more source

Metagenome assembly of high-fidelity long reads with hifiasm-meta

Nature Methods, 2022
Xiaowen Feng, Haoyu Cheng, Heng Li
exaly