Results 41 to 50 of about 1,840,918 (247)
metagenome-atlas/atlas: v2.12.0
, 2022 What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/metagenome-atlas/atlas/pull/551 use Galah instead of Drep use bbsplit for mapping to genomes (maybe move to minimap in future) faster gene catalogs ...
Silas Kieser +16 more
core +1 more source
Assembly of novel microbial genomes from gut metagenomes of rhesus macaque ( Macaca mulatta )
Gut Microbes, 2023 Rhesus macaque (RM, Macaca mulatta), as an important model animal, commonly suffers from chronic diarrheal disease, challenging the breeding of RMs. Gut microbiomes play key roles in maintaining intestinal health of RMs. However, it is still unclear about more features of gut microbiome as responsible for intestinal health of RMs.
Shengzhi Yang +8 more
openaire +3 more sources
Algorithmic and computational comparison of metagenome assemblers
The Indian Journal of Agricultural Sciences, 2020 Assembly of genome sequences of a microbial community is computationally challenging and complex than its single genome counterparts. Keeping in view the volume, diversity and varied abundance of different microbes, number of metagenome assemblers have ...
ANU SHARMA +5 more
doaj +1 more source
metagenome-atlas/atlas: v2.9.0
, 2022 What's Changed Start an atlas project from public data in SRA Docs Make atlas ready for python 3.10 https://github.com/metagenome-atlas/atlas/pull/498 Add strain profiling using inStrain You can run atlas run genomes strains New Contributors @alienzj
Silas Kieser +14 more
core +1 more source
BMC Bioinformatics, 2020 Background High-throughput sequencing can establish the functional capacity of a microbial community by cataloging the protein-coding sequences (CDS) present in the metagenome of the community.
Jonathan Louis Golob +1 more
doaj +1 more source
Diffuse flow environments within basalt- and sediment-based hydrothermal vent ecosystems harbor specialized microbial communities [PDF]
, 2013 Hydrothermal vents differ both in surface input and subsurface geochemistry. The effects of these differences on their microbial communities are not clear.
Lisa eZeigler Allen +18 more
core +1 more source
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies [PDF]
Nucleic Acids Research, 2017 EBI metagenomics (http://www.ebi.ac.uk/metagenomics) provides a free to use platform for the analysis and archiving of sequence data derived from the microbial populations found in a particular environment. Over the past two years, EBI metagenomics has increased the number of datasets analysed 10-fold.
Alex L. Mitchell +16 more
openaire +4 more sources
Metagenome-assembled microbial genomes by PacBio high-fidelity sequencing
, 2022 we constructed a total of 60 non-redundant microbial genomes from 64.5 Gb of PacBio high-fidelity (HiFi) long reads, generated from the digestate samples of a full-scale biogas plant fed with food waste. Of the 60 microbial genomes, all genomes have at least one copy of rRNA operons (16S, 23S, and 5S rRNA), 54 have ≥ 18 types of standard tRNA genes ...
openaire +2 more sources
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome
Cell Reports, 2020 Summary: The complexity of host-associated microbial ecosystems requires host-specific reference catalogs to survey the functions and diversity of these communities. We generate a comprehensive resource, the integrated mouse gut metagenome catalog (iMGMC)
Till R. Lesker +8 more
doaj +1 more source
Microbiology Resource Announcements, 2020 We report 11 bacterial draft genome sequences and 38 metagenome-assembled genomes (MAGs) from marine phytoplankton exometabolite enrichments. The genomes and MAGs represent marine bacteria adapted to the metabolite environment of phycospheres, organic matter-rich regions surrounding phytoplankton cells, and are useful for exploring functional and ...
He Fu +3 more
openaire +2 more sources