Results 131 to 140 of about 691,309 (371)

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

, 2018
We present QIIME 2, an open-source microbiome data science platform accessible to users spanning the microbiome research ecosystem, from scientists and engineers to clinicians and policy makers.
Evan Bolyen, J. Rideout, Matthew R. Dillon, Nicholas A. Bokulich, C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Harriet Alexander, E. Alm, Manimozhiyan Arumugam, F. Asnicar, Yang Bai, J. Bisanz, K. Bittinger, A. Brejnrod, Colin J. Brislawn, C. T. Brown, B. Callahan, A. Caraballo-Rodríguez, John H. Chase, Emily K. Cope, R. R. Silva, P. Dorrestein, G. Douglas, D. Durall, C. Duvallet, C. Edwardson, Madeleine Ernst, M. Estaki, Jennifer T. Fouquier, J. Gauglitz, D. Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin M Hillmann, S. Holmes, H. Holste, C. Huttenhower, C. Huttenhower, G. Huttley, Stefan Janssen, A. Jarmusch, Lingjing Jiang, Benjamin D. Kaehler, K. Kang, K. Kang, Christopher R. Keefe, P. Keim, S. Kelley, D. Knights, I. Koester, I. Koester, T. Kosciólek, Jorden Kreps, M. Langille, Joslynn S. Lee, R. Ley, R. Ley, Yong-xin Liu, E. Loftfield, C. Lozupone, Massoud Maher, C. Marotz, Bryan D. Martin, Daniel McDonald, L. McIver, L. McIver, A. Melnik, J. Metcalf, S. C. Morgan, James T. Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Jose A Navas-Molina, Louis-Félix Nothias, Stephanie B. Orchanian, Talima R. Pearson, Samuel L. Peoples, Samuel L. Peoples, D. Petráš, M. Preuss, E. Pruesse, Lasse Buur Rasmussen, A. Rivers, Ii Michael S Robeson, P. Rosenthal, N. Segata, Michael Shaffer, A. Shiffer, R. Sinha, Se Jin Song, J. Spear, Austin D. Swafford, Luke R. Thompson, Luke R. Thompson, P. Torres, Pauline Trinh, A. Tripathi, A. Tripathi, P. Turnbaugh, Sabah Ul-Hasan, J. J. Hooft, Fernando Vargas, Y. Vázquez-Baeza, E. Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C. Weber, Kyle C. Weber, Chase Williamson, A. Willis, Z. Xu, Jesse R. Zaneveld, Yilong Zhang, R. Knight, J. Caporaso   +119 more
semanticscholar   +1 more source

Taurocholic Acid Is Associated With Disturbed Functional Connectivity in the Hippocampus of Patients With Depression

Advanced Science, EarlyView.
This study identifies elevated taurocholic acid (TCA) in Major Depressive Disorder patients. Gut microbiome‐associated TCA impairs hippocampal neurogenesis, triggers microglia activation, and elicits depression‐like behavior in mice via the S1PR2. In patients, functional neuroimaging reveals that serum TCA levels correlate with altered functional ...
Xiaoying Cai, Taipeng Sun, Mengzhen Feng, Gang Chen, Junchi Zhou, Hong Zhuang, Dan Wang, Ying Chen, Zhen Cheng, Zhi Xu, Xiao Zheng, Xueli Zhang, Yonggui Yuan   +12 more
wiley   +1 more source

Temporal stability and lack of variance in microbiome composition and functionality in fit recreational athletes

Scientific Reports
Human gut microbiome composition and function is influenced by environmental and lifestyle factors, including exercise and fitness. We studied the composition and functionality of the faecal microbiome of recreational (non-elite) runners (n = 62) with ...
Ciara M. O’ Donovan, Sai Ravi Chandra Nori, Fergus Shanahan, Gerardina Celentano, Thomas Brendan Murphy, Paul D. Cotter, Orla O’ Sullivan   +6 more
doaj   +1 more source

Metabolic Comparison of One-Anastomosis Gastric Bypass, Single-Anastomosis Duodenal-Switch, Roux-en-Y Gastric Bypass, and Vertical Sleeve Gastrectomy in Rat [PDF]

, 2018
Background One-anastomosis gastric bypass (OAGB) and single-anastomosis duodenal switch (SADS) have become increasingly popular weight loss strategies. However, data directly comparing the effectiveness of these procedures with Roux-en-Y gastric bypass ...
Arble, Deanna M., Bozadjieva, Nadajda, Evers, Simon S., Frikke-Schmidt, Henriette, Lewis, Alfor, Myronovych, Andriy, Seeley, Randy J., Toure, Mouhamadoul Habib   +7 more
core   +1 more source

Links between environment, diet, and the hunter-gatherer microbiome [PDF]

, 2018
Gabriela K. Fragiadakis, Samuel A. Smits, Erica D. Sonnenburg, William Van Treuren, Gregor Reid, Rob Knight, Alphaxard Manjurano, John Changalucha, Maria Gloria Domínguez-Bello, Jeff Leach, Justin L. Sonnenburg   +10 more
openalex   +1 more source

Behind Taxonomic Variability: The Functional Redundancy in the Tick Microbiome [PDF]

, 2020
Agustín Estrada‐Peña, Alejandro Cabezas‐Cruz, Dasiel Obregón   +2 more
openalex   +1 more source

A Patient‐Derived Organ‐on‐Chip Platform for Modeling the Tumor Microenvironment and Drug Responses in Pancreatic Cancer

Advanced Science, EarlyView.
Researchers have developed a patient‐derived organ‐on‐a‐chip model for pancreatic cancer by integrating cancer cells with supportive stromal and immune cells inside a microfluidic device. This system mimics the tumor microenvironment, enabling personalized testing of chemotherapy and immunotherapy, and offering new insights into how targeting ...
Darbaz Adnan, Natan Roberto de Barros, Luca S. Santovito, Xuhong Cheng, Kristi M. Lawrence, Mariah K. Barnett, Martine D. Boetto, Neal Mehta, Ajaypal Singh, Lin Cheng, Xiangsheng Huang, Faraz Bishehsari   +11 more
wiley   +1 more source

Cervicovaginal microbiome in patients with recurrent pregnancy loss

, 2023
Ryosuke Mori, Takashi Hayakawa, Masaaki Hirayama, Fumiko Ozawa, Hiroyuki Yoshihara, Shinobu Goto, Tamao Kitaori, Yasuhiko Ozaki, Mayumi Sugiura‐Ogasawara   +8 more
openalex   +1 more source

Faecal microbiome transplantation improves clinical signs of chronic idiopathic large bowel diarrhoea in working dogs [PDF]

, 2023
J. C. Alves, Ana Santos, Patrícia Jorge, Ângelo Pitães   +3 more
openalex   +1 more source

Unveiling Global Diversity of Patescibacteriota and Functional Interactions with Host Microbes

Advanced Science, EarlyView.
Patescibacteriota represents a diverse group of ultra‐small epibiotic bacteria, which is largely overlooked. By integrating ribosomal protein S3‐based community profiling with MAG‐based metabolic potential analyses, this study provides new insights into their distribution, diversity, and potential interactions with other bacteria across diverse ...
Yanhan Ji, Xu Liu, Shuai Zhao, Sihan Zhou, Yufan Yang, Ping Zhang, Yu Shi, Wei Qin, Guibing Zhu, Yongguan Zhu, Yanzheng Gao, Jiandong Jiang, Baozhan Wang   +12 more
wiley   +1 more source