Results 121 to 130 of about 145,034 (286)
Oikos, EarlyView.Seasonality in temperate ecosystems shapes species phenology, influencing interactions and food web structure. Variations in species richness and biomass affect trophic interaction strength, a crucial factor for community stability, which can be assessed through energy fluxes – an essential indicator of ecosystem function.
Simon Bazin +4 more
wiley +1 more source
Quasispecies Analyses of the HIV-1 Near-full-length Genome with Illumina MiSeq
Frontiers in Microbiology, 2015 Human immunodeficiency virus type-1 (HIV-1) exhibits high between-host genetic diversity and within-host heterogeneity, recognized as quasispecies. Because HIV-1 quasispecies fluctuate in terms of multiple factors, such as antiretroviral exposure and ...
Hirotaka eOde +10 more
doaj +1 more source
Aromatic plants, nest bacterial diversity, and nestling condition in Corsican blue tits
Oikos, EarlyView.According to the ‘nest protection hypothesis', some passerines incorporate fresh aromatic plants into their nests which reduce pathogens that can negatively affect nestlings. We experimentally evaluated the effect of five aromatic plant species on the nest bacterial microbiota of Corsican blue tits Cyanistes caeruleus.
Hélène Dion‐Phénix +5 more
wiley +1 more source
GenomeTrakr WGS Protocol Collection and Workflow for MiSeq v2
, 2022 Here we have created a collection of all the protocols used for WGS using the MiSeq, in order, from sample extraction to NCBI submission. This collection has three sections: Section 1: WGS Wet lab workflow for Illumina MiSeq Section 2: Dry lab workflow for sequence QC and NCBI submission - Direct Submission Section 3: Dry lab workflow for sequence ...
openaire +1 more source
A simple novel device for air sampling by electrokinetic capture. [PDF]
, 2015 BackgroundA variety of different sampling devices are currently available to acquire air samples for the study of the microbiome of the air. All have a degree of technical complexity that limits deployment.
Frazier, Angel +5 more
core +3 more sources
Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform
PLOS ONE, 2017 Illumina's MiSeq has become the dominant platform for gene amplicon sequencing in microbial ecology studies; however, various technical concerns, such as reproducibility, still exist. To assess reproducibility, 16S rRNA gene amplicons from 18 soil samples of a reciprocal transplantation experiment were sequenced on an Illumina MiSeq.
Chongqing Wen +10 more
openaire +6 more sources
Advancing Extracellular Vesicle Research: A Review of Systems Biology and Multiomics Perspectives
PROTEOMICS, EarlyView.ABSTRACT Extracellular vesicles (EVs) are membrane‐bound vesicles secreted by various cell types into the extracellular space and play a role in intercellular communication. Their molecular cargo varies depending on the cell of origin and its functional state.
Gloria Kemunto +2 more
wiley +1 more source
Complete genome sequence of bovine polyomavirus type 1 from aborted cattle, isolated in Belgium in 2014 [PDF]
, 2016 <p>The complete and fully annotated genome sequence of a bovine polyomavirus type 1 (BPyV/BEL/1/2014) from aborted cattle was assembled from a metagenomics data set. The 4,697-bp circular dsDNA genome contains 6 protein-coding genes.
Behaeghel, Isabelle +7 more
core +2 more sources
16S Sequencing on Illumina MiSeq Platform v1
The 16S protocol detailed here is designed to amplify bacteria using V4-V5 hyper-variable regions of the 16S rRNA gene on the Illumina MiSeq DNA sequencer.
Angela Schmoldt, Melissa Schussman
openaire +1 more source
PLANTS, PEOPLE, PLANET, EarlyView.Trees in cities provide a great number of benefits to people and nature, but they are challenged by harsh conditions. Trees rely on helpful fungi in their roots to get essential nutrients from the soil, but we do not know which of these fungi are resistant to city landscapes.
Casper T. Verbeek +2 more
wiley +1 more source